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AT1G52470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G52460.1); Has 115 Blast hits to 115 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0400eggNOG:KOG2112EMBL:AC008016EMBL:AY954764
EMBL:CP002684EnsemblPlants:AT1G52470EnsemblPlants:AT1G52470.1entrez:841678
ESTHER:arath-F6D8.31ExpressionAtlas:Q9SSQ1Gene3D:3.40.50.1820GeneID:841678
Gramene:AT1G52470.1hmmpanther:PTHR10655hmmpanther:PTHR10655:SF32HOGENOM:HOG000260139
InterPro:IPR029058OMA:FATNCALPhylomeDB:Q9SSQ1PIR:B96565
Proteomes:UP000006548RefSeq:NP_175656.2STRING:3702.AT1G52470.1SUPFAM:SSF53474
TAIR:AT1G52470UniGene:At.52160UniProt:Q9SSQ1
Coordinates (TAIR10) chr1:+:19553347..19555357
Molecular Weight (calculated) 26212.40 Da
IEP (calculated) 6.88
GRAVY (calculated) -0.04
Length 235 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASSSRNGA NVLDLKCSHF VEPQGDQRAS IVWLHDKDEH FTDSVQFVKS LKLKNVNWIC PPIVYTNTSY DFGSNIKQDD REALDSAAKF VADLLLREPL
101: NVVKGVGGFG MGAVVALQFA TNCALGHYPI NPRVVVGING WLSITGSITS SIEYTVGAVA RAASQKIFFT RGAENRLLPY TREEEVVESL REAGFGDVFF
201: LIYSWLRHEH HLDIRDMLKL WLELSLPITK TSPLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)