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AT1G52320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT5G25590.1); Has 517 Blast hits to 513 proteins in 62 species: Archae - 6; Bacteria - 6; Metazoa - 50; Fungi - 2; Plants - 427; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIJ5eggNOG:ENOG410Y91TEMBL:CP002684EnsemblPlants:AT1G52320EnsemblPlants:AT1G52320.1EnsemblPlants:AT1G52320.3EnsemblPlants:AT1G52320.4
entrez:841662ExpressionAtlas:B3H4W5GeneID:841662Gramene:AT1G52320.1Gramene:AT1G52320.3Gramene:AT1G52320.4hmmpanther:PTHR21450
hmmpanther:PTHR21450:SF22HOGENOM:HOG000242205InterPro:IPR006867KEGG:ath:AT1G52320ncoils:CoilPfam:PF04782Proteomes:UP000006548
RefSeq:NP_001117469.1RefSeq:NP_001117470.1RefSeq:NP_564604.4STRING:3702.AT1G52320.2TAIR:AT1G52320UniGene:At.20580UniGene:At.52154
UniProt:B3H4W5
Coordinates (TAIR10) chr1:+:19485399..19487204
Molecular Weight (calculated) 54954.50 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.79
Length 472 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKSKGIGIP GERRGMRMPV TATHLANVFI ELDDNFLKAS ESAHDVSKML EATRLHYHSN FADNRGHIDH SARVMRVITW NRSFRGIPNA DDGKDDVDLE
101: ENETHATVLD KLLAWEKKLY DEVKAGELMK IEYQKKVAHL NRVKKRGGHS DSLERAKAAV SHLHTRYIVD MQSMDSTVSE INRLRDEQLY LKLVHLVEAM
201: GKMWEMMQIH HQRQAEISKV LRSLDVSQAV KETNDHHHER TIQLLAVVQE WHTQFCRMID HQKEYIKALG GWLKLNLIPI ESTLKEKVSS PPRVPNPAIQ
301: KLLHAWYDRL DKIPDEMAKS AIINFAAVVS TIMQQQEDEI SLRNKCEETR KELGRKIRQF EDWYHKYIQK RGPEGMNPDE ADNDHNDEVA VRQFNVEQIK
401: KRLEEEEEAY HRQSHQVREK SLASLRTRLP ELFQAMSEVA YSCSDMYRAI TYASKRQSQS ERHQKPSQGQ SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)