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AT1G52240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.991
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RHO guanyl-nucleotide exchange factor 11
Curator
Summary (TAIR10)
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily .
Computational
Description (TAIR10)
RHO guanyl-nucleotide exchange factor 11 (ROPGEF11); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512), Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 13 (TAIR:AT3G16130.1); Has 1099 Blast hits to 1098 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 490; Fungi - 40; Plants - 487; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Protein Annotations
BioGrid:26879eggNOG:ENOG410IH1BeggNOG:ENOG410YG86EMBL:AC022354EMBL:BT033039EMBL:CP002684EnsemblPlants:AT1G52240
EnsemblPlants:AT1G52240.1entrez:841654ExpressionAtlas:Q9M811GeneID:841654Genevisible:Q9M811GO:GO:0005089GO:GO:0005737
Gramene:AT1G52240.1hmmpanther:PTHR33101hmmpanther:PTHR33101:SF10HOGENOM:HOG000238290InterPro:IPR005512PaxDb:Q9M811Pfam:PF01221
Pfam:PF03759Pfscan:PS51334PIR:D96562PRIDE:Q9M811PRO:PR:Q9M811PROSITE:PS51334ProteinModelPortal:Q9M811
Proteomes:UP000006548RefSeq:NP_175634.5STRING:3702.AT1G52240.1SUPFAM:SSF54648TAIR:AT1G52240tair10-symbols:ATROPGEF11tair10-symbols:PIRF1
tair10-symbols:ROPGEF11UniGene:At.16831UniGene:At.25110UniProt:B3LF51UniProt:F4ICV0UniProt:Q9C817UniProt:Q9M811
Coordinates (TAIR10) chr1:-:19455766..19459235
Molecular Weight (calculated) 68686.20 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.48
Length 607 amino acids
Sequence (TAIR10)
(BLAST)
001: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVA LLLLNYTTLI MGMPKLREEV DFNDNMNENS ASRHVKSWSS
101: DCAMRMDGSD NLDDDDNDMM MFRSQPGKCG SVDRPSLPIG GVTPNRNDKL PRVSSSDSME ALIILQAAME QMKEKFSKLL LGEDMSGGGK GVSSALALSN
201: AITNLAASAF GEQRRLEPMA VDRKTRWRRE IGWLISVADY IVEFAPTQQT NKDGTSMEVM STRQRTDLLC NIPALKKLDA MLLDCLDKFK DQDEFYYVKK
301: DSPDSCETRN DEKWWLPAVK VPPNGLSEIS RRFLQSQKEC VNQVLKAAMA INAQVLSEME IPESYLESLP KNGRASLGDV IYRMITVEMF DADQFLIEMD
401: LSSEHKILDL KNRIEASIVI WKRKMVQKDT KSPWGSTVSI EKREQFEERA ETILLLLKQG FPGISQSSLD ISKIQFNRDV GLAILESYSR VLESLAHTVM
501: SRIEDVLYAD QLTQEPTNNA PSKNRYSLKE NEKLREERLS FTEDMASGTL SDVMQWGNKN NEMKKESFFG DREKPLLSKV TGIMTNNKKS SYLDNLGAMR
601: SPTARYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)