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AT1G52230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : photosystem I subunit H2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
photosystem I subunit H2 (PSAH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit VI (InterPro:IPR004928); BEST Arabidopsis thaliana protein match is: photosystem I subunit H-1 (TAIR:AT3G16140.1); Has 102 Blast hits to 102 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:26878eggNOG:ENOG410IXC4eggNOG:ENOG4112D30EMBL:AC022354EMBL:AF385712EMBL:AJ245632EMBL:AY085302
EMBL:AY133667EMBL:CP002684EnsemblPlants:AT1G52230EnsemblPlants:AT1G52230.1entrez:841653Gene3D:1.20.5.220GeneID:841653
Genevisible:Q9SUI6GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009538GO:GO:0009579GO:GO:0009735
GO:GO:0010287GO:GO:0015979GO:GO:0016020GO:GO:0016021Gramene:AT1G52230.1gramene_pathway:PWY-101hmmpanther:PTHR34787
hmmpanther:PTHR34787:SF1HOGENOM:HOG000265525InParanoid:Q9SUI6InterPro:IPR004928InterPro:IPR029027KEGG:ath:AT1G52230KO:K02695
OMA:DMENTTGPaxDb:Q9SUI6Pfam:PF03244Pfam:Q9SUI6PhylomeDB:Q9SUI6PIR:C96562PRIDE:Q9SUI6
PRO:PR:Q9SUI6ProteinModelPortal:Q9SUI6Proteomes:UP000006548RefSeq:NP_175633.1SMR:Q9SUI6STRING:3702.AT1G52230.1TAIR:AT1G52230
tair10-symbols:PSAH-2tair10-symbols:PSAH2tair10-symbols:PSI-HTCDB:5.B.4.1.1UniGene:At.25110UniProt:Q9SUI6
Coordinates (TAIR10) chr1:+:19454902..19455508
Molecular Weight (calculated) 15274.40 Da
IEP (calculated) 10.51
GRAVY (calculated) -0.11
Length 145 amino acids
Sequence (TAIR10)
(BLAST)
001: MASFATIAAV QPSAAVKGLG GSSLAGAKLF IKPSRQSFKT KSTRAGAVVA KYGDKSVYFD LEDLGNTTGQ WDVYGSDAPS PYNPLQSKFF ETFAAPFTKR
101: GLLLKFLILG GGSLLTYVSA NSTGDVLPIK RGPQEPPKLG PRGKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)