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AT1G52220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30865669 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:26877eggNOG:ENOG410IYKJeggNOG:ENOG4112195EMBL:AC022354
EMBL:AF410269EMBL:AY086098EMBL:AY097365EMBL:CP002684
EnsemblPlants:AT1G52220EnsemblPlants:AT1G52220.1EnsemblPlants:AT1G52220.2EnsemblPlants:AT1G52220.3
entrez:841652ExpressionAtlas:Q9M812GeneID:841652Genevisible:Q9M812
GO:GO:0009507GO:GO:0009535GO:GO:0016021hmmpanther:PTHR33222
hmmpanther:PTHR33222:SF3HOGENOM:HOG000239454InParanoid:Q9M812IntAct:Q9M812
InterPro:IPR025564InterPro:IPR033344iPTMnet:Q9M812KEGG:ath:AT1G52220
OMA:SSWFIYRPANTHER:PTHR33222PaxDb:Q9M812Pfam:PF14159
Pfam:Q9M812PhylomeDB:Q9M812PIR:B96562PRIDE:Q9M812
PRO:PR:Q9M812ProteinModelPortal:Q9M812Proteomes:UP000006548RefSeq:NP_001031173.1
RefSeq:NP_001077703.1RefSeq:NP_564603.1STRING:3702.AT1G52220.1TAIR:AT1G52220
TMHMM:TMhelixUniGene:At.16830UniProt:Q9M812
Coordinates (TAIR10) chr1:-:19453770..19454605
Molecular Weight (calculated) 16946.60 Da
IEP (calculated) 9.63
GRAVY (calculated) 0.21
Length 156 amino acids
Sequence (TAIR10)
(BLAST)
001: MASISATLPS PLLLTQRKSN LTSIQKLPFS LTRGTNDLSP LSLTRNPSSI SLMVKASGES SDSSTDLDVV STIQNVWDKS EDRLGLIGLG FAGIVALWAS
101: LNLITAIDKL PVISSGFELV GILFSTWFTY RYLLFKPDRQ ELSKIVKKSV ADILGQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)