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AT1G52150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Curator
Summary (TAIR10)
Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation.
Computational
Description (TAIR10)
ATHB-15; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox gene 8 (TAIR:AT4G32880.1); Has 3146 Blast hits to 3075 proteins in 258 species: Archae - 0; Bacteria - 18; Metazoa - 766; Fungi - 90; Plants - 2237; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
BioGrid:26870eggNOG:ENOG410IFI0eggNOG:ENOG410XQ3REMBL:AC006216EMBL:AC022354EMBL:AJ439449EMBL:AY060556
EMBL:AY902309EMBL:CP002684EnsemblPlants:AT1G52150EnsemblPlants:AT1G52150.1entrez:841645ExpressionAtlas:Q9ZU11Gene3D:1.10.10.60
Gene3D:3.30.530.20GeneID:841645Genevisible:Q9ZU11GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0008289GO:GO:0030154hmmpanther:PTHR24326hmmpanther:PTHR24326:SF217HOGENOM:HOG000272677InParanoid:Q9ZU11InterPro:IPR001356
InterPro:IPR002913InterPro:IPR009057InterPro:IPR013978InterPro:IPR023393ncoils:CoilPaxDb:Q9ZU11Pfam:PF00046
Pfam:PF01852Pfam:PF08670Pfam:Q9ZU11Pfscan:PS50071Pfscan:PS50848PhylomeDB:Q9ZU11PIR:E96561
PRIDE:Q9ZU11PRO:PR:Q9ZU11PROSITE:PS50071PROSITE:PS50848ProteinModelPortal:Q9ZU11Proteomes:UP000006548RefSeq:NP_175627.1
SMART:SM00234SMART:SM00389STRING:3702.AT1G52150.2SUPFAM:SSF46689SUPFAM:SSF55961TAIR:AT1G52150tair10-symbols:ATHB-15
tair10-symbols:ATHB15tair10-symbols:CNAtair10-symbols:ICU4UniGene:At.11011UniProt:Q9ZU11
Coordinates (TAIR10) chr1:-:19409913..19413961
Molecular Weight (calculated) 91706.40 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.10
Length 836 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)