suba logo
AT1G51965.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23444301 (2013): mitochondrion
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ABA Overly-Sensitive 5
Curator
Summary (TAIR10)
Encodes ABA Overly-Sensitive5 (ABO5), a pentatricopeptide repeat protein required for cis-splicing of mitochondrial nad2 intron 3. Involved in response to abscisic acid.
Computational
Description (TAIR10)
ABA Overly-Sensitive 5 (ABO5); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: proton gradient regulation 3 (TAIR:AT4G31850.1); Has 51797 Blast hits to 15079 proteins in 304 species: Archae - 5; Bacteria - 58; Metazoa - 616; Fungi - 900; Plants - 48174; Viruses - 0; Other Eukaryotes - 2044 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC006216EMBL:CP002684EnsemblPlants:AT1G51965EnsemblPlants:AT1G51965.1entrez:841625
Gene3D:1.25.40.10GeneID:841625GO:GO:0005739GO:GO:0008380GO:GO:0009737Gramene:AT1G51965.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF381HOGENOM:HOG000083094InParanoid:Q9ZU27InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT1G51965OMA:YLVKSLC
PaxDb:Q9ZU27Pfam:PF01535Pfam:PF13041Pfam:Q9ZU27Pfscan:PS51375PhylomeDB:Q9ZU27PIR:B96559
PRIDE:Q9ZU27PRO:PR:Q9ZU27PROSITE:PS51375ProteinModelPortal:Q9ZU27Proteomes:UP000006548RefSeq:NP_683419.1SMR:Q9ZU27
STRING:3702.AT1G51965.1SUPFAM:SSF81901TAIR:AT1G51965tair10-symbols:ABO5TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.52149
UniProt:Q9ZU27
Coordinates (TAIR10) chr1:-:19312078..19314145
Molecular Weight (calculated) 73882.80 Da
IEP (calculated) 8.48
GRAVY (calculated) -0.18
Length 650 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLLRRRFFN SVNTITRPNR RHYATKYVAK VTSSSPSGRS LSAEVSLPNP LPADVRGYPL PRRHLICRAT NLITGASNLS DAFSDLSDYL SSLSLSLTPD
101: EASEILKSLN SPLLAVEFFK LVPSLCPYSQ NDPFLYNRII LILSRSNLPD RFDRVRSILD SMVKSNVHGN ISTVNILIGF FGNTEDLQMC LRLVKKWDLK
201: MNSFTYKCLL QAYLRSRDYS KAFDVYCEIR RGGHKLDIFA YNMLLDALAK DEKACQVFED MKKRHCRRDE YTYTIMIRTM GRIGKCDEAV GLFNEMITEG
301: LTLNVVGYNT LMQVLAKGKM VDKAIQVFSR MVETGCRPNE YTYSLLLNLL VAEGQLVRLD GVVEISKRYM TQGIYSYLVR TLSKLGHVSE AHRLFCDMWS
401: FPVKGERDSY MSMLESLCGA GKTIEAIEML SKIHEKGVVT DTMMYNTVFS ALGKLKQISH IHDLFEKMKK DGPSPDIFTY NILIASFGRV GEVDEAINIF
501: EELERSDCKP DIISYNSLIN CLGKNGDVDE AHVRFKEMQE KGLNPDVVTY STLMECFGKT ERVEMAYSLF EEMLVKGCQP NIVTYNILLD CLEKNGRTAE
601: AVDLYSKMKQ QGLTPDSITY TVLERLQSVS HGKSRIRRKN PITGWVVSPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)