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AT1G51950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : indole-3-acetic acid inducible 18
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
indole-3-acetic acid inducible 18 (IAA18); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: phytochrome-associated protein 1 (TAIR:AT3G16500.1); Has 1911 Blast hits to 1901 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1911; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INWJeggNOG:ENOG410YI31EMBL:AY669797EnsemblPlants:AT1G51950EnsemblPlants:AT1G51950.1entrez:841623ExpressionAtlas:Q2VWA3
GeneID:841623GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009733GO:GO:0009734Gramene:AT1G51950.1
hmmpanther:PTHR31734hmmpanther:PTHR31734:SF2InterPro:IPR000270InterPro:IPR003311InterPro:IPR033389KEGG:ath:AT1G51950KO:K14484
OMA:LMIPQERPANTHER:PTHR31734PaxDb:Q2VWA3Pfam:O24408Pfam:PF02309Pfscan:PS51745PhylomeDB:O24408
PhylomeDB:Q2VWA3PRIDE:Q2VWA3PRO:PR:O24408PROSITE:PS51745ProteinModelPortal:Q2VWA3RefSeq:NP_175607.1SMR:Q2VWA3
STRING:3702.AT1G51950.1SUPFAM:SSF54277TAIR:AT1G51950tair10-symbols:IAA18UniGene:At.16067UniProt:O24408UniProt:Q2VWA3
Coordinates (TAIR10) chr1:+:19305670..19307130
Molecular Weight (calculated) 29899.60 Da
IEP (calculated) 9.82
GRAVY (calculated) -0.78
Length 267 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)