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AT1G51940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : protein kinase family protein / peptidoglycan-binding LysM domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: chitin elicitor receptor kinase 1 (TAIR:AT3G21630.1); Has 117626 Blast hits to 116415 proteins in 4493 species: Archae - 110; Bacteria - 13527; Metazoa - 43649; Fungi - 10139; Plants - 32288; Viruses - 471; Other Eukaryotes - 17442 (source: NCBI BLink).
Protein Annotations
EC:2.7.11.-eggNOG:COG0515eggNOG:ENOG410IK61EMBL:AC015448EMBL:BX816305EMBL:CP002684EnsemblPlants:AT1G51940
EnsemblPlants:AT1G51940.1entrez:841622Gene3D:2.60.120.200Gene3D:3.10.350.10GeneID:841622Genevisible:F4IB81GO:GO:0004674
GO:GO:0005524GO:GO:0005886GO:GO:0006952GO:GO:0009737GO:GO:0009738GO:GO:0009789GO:GO:0016021
GO:GO:0031348GO:GO:0045087GO:GO:0050832Gramene:AT1G51940.1hmmpanther:PTHR27001hmmpanther:PTHR27001:SF102HOGENOM:HOG000116550
InParanoid:F4IB81InterPro:IPR000719InterPro:IPR001245InterPro:IPR008271InterPro:IPR011009InterPro:IPR013320InterPro:IPR017441
InterPro:IPR018392KEGG:ath:AT1G51940OMA:QNKGHTPPaxDb:F4IB81Pfam:F4IB81Pfam:PF07714Pfscan:PS50011
PIR:G96558PRIDE:F4IB81PRO:PR:F4IB81PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011PROSITE:PS51782
ProteinModelPortal:F4IB81Proteomes:UP000006548RefSeq:NP_175606.2scanprosite:PS00107scanprosite:PS00108SMART:SM00220SMART:SM00257
SMR:F4IB81STRING:3702.AT1G51940.1SUPFAM:SSF54106SUPFAM:SSF56112TAIR:AT1G51940TMHMM:TMhelixUniGene:At.27936
UniProt:F4IB81
Coordinates (TAIR10) chr1:-:19296092..19298941
Molecular Weight (calculated) 71448.60 Da
IEP (calculated) 6.28
GRAVY (calculated) -0.00
Length 651 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLTFYIFFL SLLPSFSSSK PMNCSDTTRL CSSFLAFKPN QNQSFSVIQS MFDVLPQDIT ADISGGYFFI KKNCSCLTTT HQYTTNTTFT IRQNVGYVYN
101: VTVSAYSGLA FPPNTTRAAR AGAVVSVQLL CGCSSGLWNY LMSYVAMAGD SVQSLSSRFG VSMDRIEDVN GILNLDNITA GDLLYIPLDS VPGEPYETSK
201: INPPAPSPAP ASSLANGNIS DDQVNHTAKS GSHVPYIWIV GGLGVVLALL VLCILVCICL RSSSCSSSEE DGNGHNFQIL RKSGFFCGSG RYNCCRSGDF
301: RQTNGETQVV AIPKALGDGM FEIEKPMVFT YEEIRAATDE FSDSNLLGHG NYGSVYFGLL REQEVAVKRM TATKTKEFAA EMKVLCKVHH SNLVELIGYA
401: ATVDELFVVY EYVRKGMLKS HLHDPQSKGN TPLSWIMRNQ IALDAARGLE YIHEHTKTHY VHRDIKTSNI LLDEAFRAKI SDFGLAKLVE KTGEGEISVT
501: KVVGTYGYLA PEYLSDGLAT SKSDIYAFGV VLFEIISGRE AVIRTEAIGT KNPERRPLAS IMLAVLKNSP DSMNMSSLKE FVDPNMMDLY PHDCLFKIAT
601: LAKQCVDDDP ILRPNMKQVV ISLSQILLSS IEWEATLAGN SQVFSGLVQG R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)