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AT1G51880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.982
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28003327 (2017): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : root hair specific 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
root hair specific 6 (RHS6); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root hair; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G51860.1); Has 126936 Blast hits to 118973 proteins in 4393 species: Archae - 105; Bacteria - 13375; Metazoa - 43816; Fungi - 9840; Plants - 42085; Viruses - 436; Other Eukaryotes - 17279 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G51880-MONOMERBioGrid:26840EC:2.7.11.1eggNOG:COG0515eggNOG:ENOG410J721EMBL:AC015448EMBL:CP002684
EMBL:FJ708654EnsemblPlants:AT1G51880EnsemblPlants:AT1G51880.1entrez:841615Gene3D:2.60.120.200Gene3D:3.80.10.10GeneID:841615
Genevisible:Q9FZB1GO:GO:0004674GO:GO:0005524GO:GO:0016021Gramene:AT1G51880.1hmmpanther:PTHR27003hmmpanther:PTHR27003:SF44
HOGENOM:HOG000116550InParanoid:Q9FZB1InterPro:IPR000719InterPro:IPR001245InterPro:IPR008271InterPro:IPR011009InterPro:IPR013320
InterPro:IPR017441InterPro:IPR024788InterPro:IPR032675iPTMnet:Q9FZB1KEGG:ath:AT1G51880PaxDb:Q9FZB1Pfam:PF07714
Pfam:PF12819Pfam:Q9FZB1Pfscan:PS50011PhylomeDB:Q9FZB1PIR:C96558PRIDE:Q9FZB1PRO:PR:Q9FZB1
PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011ProteinModelPortal:Q9FZB1Proteomes:UP000006548RefSeq:NP_175600.2scanprosite:PS00107
scanprosite:PS00108SMART:SM00220SMR:Q9FZB1STRING:3702.AT1G51880.1SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT1G51880
tair10-symbols:RHS6TMHMM:TMhelixUniGene:At.52145UniProt:Q9FZB1
Coordinates (TAIR10) chr1:-:19270193..19274068
Molecular Weight (calculated) 98263.50 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.23
Length 880 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSIHGFLLF LITAYVILES VQAQDQLGFI SLDCGLVPKN ATYTEKTTNI TYKSDANYID SGLVGRISAE YKAQLQQQTW TVRSFPEGER NCYNFNLTAK
101: SRYLIRATFT YGNYDGLRQV PKFDIHIGPS KWTSVKLDGV GNGAVLEMIH VLTQDRLQIC LVKTGKGIPF ISSLELRPLN NNTYLTQSGS LIGFARVFFS
201: ATPTFIRYDE DIHDRVWVRQ FGNGLKSIST DLLVDTSNPY DVPQAVAKTA CVPSNASQPL IFDWTLDNIT SQSYVYMHFA EIQTLKDNDI REFNITYNGG
301: QNVYSYLRPE KFEISTLFDS KPLSSPDGSF SLSFTKTGNS TLPPLINGLE IYKVLDLLEL ETDQDEVSAM INIKATYDLS KKVSWQGDPC APKSYQWEGL
401: NCSYPNSDQP RIISLNLAEN KLTGTITPEI SKLTQLIELD LSKNDLSGEI PEFFADMKLL KLIKLNVFIC RNLSGNLGLN STIPDSIQQR LDSKSLILIL
501: SKTVTKTVTL KGKSKKVPMI PIVASVAGVF ALLVILAIFF VVRRKNGESN KGTNPSIITK ERRITYPEVL KMTNNFERVL GKGGFGTVYH GNLEDTQVAV
601: KMLSHSSAQG YKEFKAEVEL LLRVHHRNLV GLVGYCDDGD NLALIYEYMA NGDLKENMSG KRGGNVLTWE NRMQIAVEAA QGLEYLHNGC TPPMVHRDVK
701: TTNILLNERY GAKLADFGLS RSFPVDGESH VSTVVAGTPG YLDPEYYRTN WLSEKSDVYS FGVVLLEIVT NQPVTDKTRE RTHINEWVGS MLTKGDIKSI
801: LDPKLMGDYD TNGAWKIVEL ALACVNPSSN RRPTMAHVVT ELNECVALEN ARRQGREEMH TSGYVDFSRS SASEFSPGAR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)