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AT1G51730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.927
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin-conjugating enzyme family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin-conjugating enzyme family protein; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), RWD (InterPro:IPR006575); Has 930 Blast hits to 928 proteins in 205 species: Archae - 0; Bacteria - 2; Metazoa - 543; Fungi - 220; Plants - 66; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT0MeggNOG:KOG4018EMBL:AC025294EMBL:AY081291EMBL:BT000383EMBL:CP002684EnsemblPlants:AT1G51730
EnsemblPlants:AT1G51730.1entrez:841598Gene3D:3.10.110.10GeneID:841598Gramene:AT1G51730.1hmmpanther:PTHR12292HOGENOM:HOG000237961
InterPro:IPR006575InterPro:IPR016135KEGG:ath:AT1G51730ncoils:CoilOMA:ATEPFHKPfam:PF05773Pfscan:PS50908
PhylomeDB:Q9C8I1PIR:C96556PROSITE:PS50908Proteomes:UP000006548RefSeq:NP_175584.1SMART:SM00591SMR:Q9C8I1
STRING:3702.AT1G51730.1SUPFAM:SSF54495TAIR:AT1G51730UniGene:At.19414UniGene:At.21082UniProt:Q9C8I1
Coordinates (TAIR10) chr1:-:19186812..19188638
Molecular Weight (calculated) 28707.00 Da
IEP (calculated) 3.86
GRAVY (calculated) -0.66
Length 252 amino acids
Sequence (TAIR10)
(BLAST)
001: MTEYKQEQEM EIEALEAILM DEFKEIHSSE SGLNTSNRCF QITVTPQDDE LEELAIPPVQ LALVFSHTEN YPDEAPLLDV KSIRGIHVSD LTILKEKLEQ
101: EASENLGMAM IYTLVSSAKD WLSEHYGQDD AAEFAEVEAA KEDEVIVPHG EPVTLETFLA WRERYEAELA LERAKLMPES ALTAPKEKKL TGRQWFESGR
201: GRGTVVIADE EDEEEDEEDI DFEDEDFEDD EEDMLEHYLA EKSDSSAPPT RT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)