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AT1G51710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ubiquitin-specific protease 6
Curator
Summary (TAIR10)
Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin.
Computational
Description (TAIR10)
ubiquitin-specific protease 6 (UBP6); CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Ubiquitin conserved site (InterPro:IPR019954), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 7 (TAIR:AT3G21280.1); Has 4793 Blast hits to 4476 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 2508; Fungi - 875; Plants - 657; Viruses - 2; Other Eukaryotes - 751 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G51710-MONOMERBioCyc:ARA:GQT-1079-MONOMERBioGrid:26821DNASU:841596EC:3.4.19.12eggNOG:ENOG410XP96eggNOG:KOG1872
EMBL:AC025294EMBL:AF302660EMBL:AK221019EMBL:AY050817EMBL:AY084730EMBL:AY114081EMBL:BT000658
EMBL:CP002684EnsemblPlants:AT1G51710EnsemblPlants:AT1G51710.1entrez:841596ExpressionAtlas:Q949Y0GeneID:841596Genevisible:Q949Y0
GO:GO:0005516GO:GO:0006511GO:GO:0009506GO:GO:0016579GO:GO:0036459hmmpanther:PTHR24006HOGENOM:HOG000202292
InParanoid:Q949Y0InterPro:IPR000626InterPro:IPR001394InterPro:IPR018200InterPro:IPR019954InterPro:IPR028889InterPro:IPR029071
iPTMnet:Q949Y0MEROPS:C19.094MINT:MINT-1351065OMA:FKVKVKWPaxDb:Q949Y0Pfam:PF00240Pfam:PF00443
Pfam:Q949Y0Pfscan:PS50053Pfscan:PS50235PhylomeDB:Q949Y0PIR:A96556PRIDE:Q949Y0PRO:PR:Q949Y0
PROSITE:PS00299PROSITE:PS00972PROSITE:PS00973PROSITE:PS50053PROSITE:PS50235ProteinModelPortal:Q949Y0Proteomes:UP000006548
RefSeq:NP_564596.1scanprosite:PS00299scanprosite:PS00972scanprosite:PS00973SMART:SM00213SMR:Q949Y0STRING:3702.AT1G51710.1
SUPFAM:SSF54001SUPFAM:SSF54236TAIR:AT1G51710tair10-symbols:ATUBP6tair10-symbols:UBP6UniGene:At.16941UniProt:Q949Y0
Coordinates (TAIR10) chr1:-:19175805..19179894
Molecular Weight (calculated) 53698.80 Da
IEP (calculated) 6.12
GRAVY (calculated) -0.47
Length 482 amino acids
Sequence (TAIR10)
(BLAST)
001: MPTVSVKWQK KVLDGIEIDV SLPPYVFKAQ LYDLTGVPPE RQKIMVKGGL LKDDGDWAAI GVKDGQKLMM MGTADEIVKA PEKAIVFAED LPEEALATNL
101: GYSAGLVNLG NTCYMNSTVQ CLKSVPELKS ALSNYSLAAR SNDVDQTSHM LTVATRELFG ELDRSVNAVS PSQFWMVLRK KYPQFSQLQN GMHMQQDAEE
201: CWTQLLYTLS QSLKAPTSSE GADAVKALFG VNLQSRLHCQ ESGEESSETE SVYSLKCHIS HEVNHLHEGL KHGLKGELEK TSPALGRTAL YVKESLIDSL
301: PRYLTVQFVR FFWKRESNQK AKILRKVDYP LVLDIFDLCS EDLRKKLEAP RQKLREEEGK KLGLQTSAKS GSKDSDVKMT DAEASANGSG ESSTVNPQEG
401: TSSEKETHMT GIYDLVAVLT HKGRSADSGH YVAWVKQESG KWIQYDDDNP SMQREEDITK LSGGGDWHMA YITMYKARFV SM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)