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AT1G51600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ZIM-LIKE 2
Curator
Summary (TAIR10)
member of a novel family of plant-specific GATA-type transcription factors.
Computational
Description (TAIR10)
ZIM-LIKE 2 (ZML2); FUNCTIONS IN: sequence-specific DNA binding, zinc ion binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), Zinc finger, GATA-type (InterPro:IPR000679), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: ZIM-like 1 (TAIR:AT3G21175.1); Has 2012 Blast hits to 2008 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 371; Plants - 1601; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).
Protein Annotations
BioGrid:26810eggNOG:COG5641eggNOG:KOG1601EMBL:AB119061EMBL:AC024261EMBL:AC025294EMBL:AY045906
EMBL:AY150395EMBL:CP002684EnsemblPlants:AT1G51600EnsemblPlants:AT1G51600.1EnsemblPlants:AT1G51600.2entrez:841585Gene3D:3.30.50.10
GeneID:841585Genevisible:Q8H1G0GO:GO:0000977GO:GO:0001085GO:GO:0001228GO:GO:0003682GO:GO:0005634
GO:GO:0005667GO:GO:0006366GO:GO:0008270GO:GO:0030154GO:GO:0045944Gramene:AT1G51600.1Gramene:AT1G51600.2
hmmpanther:PTHR10071hmmpanther:PTHR10071:SF167HOGENOM:HOG000238783InParanoid:Q8H1G0IntAct:Q8H1G0InterPro:IPR000679InterPro:IPR010399
InterPro:IPR010402InterPro:IPR013088iPTMnet:Q8H1G0KEGG:ath:AT1G51600OMA:HIHNGSGPaxDb:Q8H1G0Pfam:PF00320
Pfam:PF06200Pfam:PF06203Pfam:Q8H1G0Pfscan:PS50114Pfscan:PS51017Pfscan:PS51320PhylomeDB:Q8H1G0
PIR:F96554PRIDE:Q8H1G0PRO:PR:Q8H1G0PROSITE:PS00344PROSITE:PS50114PROSITE:PS51017PROSITE:PS51320
ProteinModelPortal:Q8H1G0Proteomes:UP000006548RefSeq:NP_564593.1RefSeq:NP_974002.1scanprosite:PS00344SMART:SM00401SMART:SM00979
SMR:Q8H1G0STRING:3702.AT1G51600.1SUPFAM:SSF57716TAIR:AT1G51600tair10-symbols:GATA28tair10-symbols:TIFY2Atair10-symbols:ZML2
UniGene:At.26180UniGene:At.37784UniProt:Q8H1G0
Coordinates (TAIR10) chr1:+:19133176..19135252
Molecular Weight (calculated) 33131.80 Da
IEP (calculated) 7.19
GRAVY (calculated) -0.76
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)