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AT1G51580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding KH domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1); Has 6723 Blast hits to 3876 proteins in 329 species: Archae - 3; Bacteria - 266; Metazoa - 4280; Fungi - 575; Plants - 1237; Viruses - 20; Other Eukaryotes - 342 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNN8eggNOG:KOG2190EMBL:AC024261EMBL:AC025294
EMBL:AK227874EMBL:BT008776EMBL:CP002684EnsemblPlants:AT1G51580
EnsemblPlants:AT1G51580.1entrez:841583Gene3D:3.30.1370.10GeneID:841583
GO:GO:0003723Gramene:AT1G51580.1hmmpanther:PTHR10288hmmpanther:PTHR10288:SF174
HOGENOM:HOG000077702IntAct:Q9C553InterPro:IPR004087InterPro:IPR004088
KEGG:ath:AT1G51580KO:K13162OMA:YSYGCEQPfam:PF00013
Pfscan:PS50084PhylomeDB:Q9C553PIR:D96554PROSITE:PS50084
Proteomes:UP000006548RefSeq:NP_175569.1SMART:SM00322SMR:Q9C553
STRING:3702.AT1G51580.1SUPFAM:SSF54791TAIR:AT1G51580UniGene:At.37784
UniGene:At.66909UniProt:Q9C553
Coordinates (TAIR10) chr1:+:19125612..19128102
Molecular Weight (calculated) 67118.80 Da
IEP (calculated) 6.06
GRAVY (calculated) -0.36
Length 621 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)