AT1G51340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.985 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MATE efflux family protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G08040.2); Has 12629 Blast hits to 12566 proteins in 2039 species: Archae - 347; Bacteria - 9962; Metazoa - 104; Fungi - 158; Plants - 404; Viruses - 0; Other Eukaryotes - 1654 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19032034..19034681 | ||||||||
| Molecular Weight (calculated) | 54520.30 Da | ||||||||
| IEP (calculated) | 8.48 | ||||||||
| GRAVY (calculated) | 0.69 | ||||||||
| Length | 509 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MATTQIFQET LYTFSLVISV LKFDELGLEI ARIALPAALA LTADPIASLV DTAFIGQIGP VELAAVGVSI ALFNQVSRIA IFPLVSITTS FVAEEDACSS 101: QQDTVRDHKE CIEIGINNPT EETIELIPEK HKDSLSDEFK TSSSIFSISK PPAKKRNIPS ASSALIIGGV LGLFQAVFLI SAAKPLLSFM GVKHDSPMMR 201: PSQRYLSLRS LGAPAVLLSL AAQGVFRGFK DTTTPLFATV IGDVTNIILD PIFIFVFRLG VTGAATAHVI SQYLMCGILL WKLMGQVDIF NMSTKHLQFC 301: RFMKNGFLLL MRVIAVTFCV TLSASLAARE GSTSMAAFQV CLQVWLATSL LADGYAVAGQ AILASAFAKK DYKRAAATAS RVLQLGLVLG FVLAVILGAG 401: LHFGARVFTK DDKVLHLISI GLPFVAGTQP INALAFVFDG VNFGASDFGY AAASLVMVAI VSILCLLFLS STHGFIGLWF GLTIYMSLRA AVGFWRIGTG 501: TGPWSFLRS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)