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AT1G51200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : A20/AN1-like zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1); Has 1055 Blast hits to 1034 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 447; Fungi - 9; Plants - 481; Viruses - 6; Other Eukaryotes - 112 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111UWCeggNOG:KOG3173EMBL:AC006085EMBL:AY056445EMBL:BT001984EMBL:BT015115EMBL:CP002684
EnsemblPlants:AT1G51200EnsemblPlants:AT1G51200.1EnsemblPlants:AT1G51200.2EnsemblPlants:AT1G51200.3EnsemblPlants:AT1G51200.4entrez:841543Gene3D:4.10.1110.10
GeneID:841543Genevisible:Q8H0X0GO:GO:0003677GO:GO:0008270Gramene:AT1G51200.1Gramene:AT1G51200.2Gramene:AT1G51200.3
Gramene:AT1G51200.4hmmpanther:PTHR10634hmmpanther:PTHR10634:SF32HOGENOM:HOG000238229InterPro:IPR000058InterPro:IPR002653KEGG:ath:AT1G51200
OMA:KGPSRCTPaxDb:Q8H0X0Pfam:PF01428Pfam:PF01754Pfam:Q8H0X0Pfscan:PS51036Pfscan:PS51039
PhylomeDB:Q8H0X0PIR:G96549PRO:PR:Q8H0X0PROSITE:PS51036PROSITE:PS51039ProteinModelPortal:Q8H0X0Proteomes:UP000006548
RefSeq:NP_001077694.1RefSeq:NP_001185193.1RefSeq:NP_001185194.1RefSeq:NP_564585.1SMART:SM00154SMART:SM00259SMR:Q8H0X0
STRING:3702.AT1G51200.1SUPFAM:SSF118310SUPFAM:SSF57716TAIR:AT1G51200UniGene:At.11229UniProt:Q8H0X0
Coordinates (TAIR10) chr1:+:18985690..18986211
Molecular Weight (calculated) 18429.90 Da
IEP (calculated) 7.86
GRAVY (calculated) -0.27
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MDHDKTGCQS PPEGPKLCTN NCGFFGSAAT MNMCSKCHKD MLFQQEQGAK FASAVSGTSS SSNIIKETFT AALVDIETKS VEPMTVSVQP SSVQVVAEVV
101: APEEAAKPKG PSRCTTCNKR VGLTGFKCRC GSLFCGTHRY ADVHDCSFNY HAAAQEAIAK ANPVVKAEKL DKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)