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AT1G51110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:22274653 (2012): plastid plastid thylakoid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plastid-lipid associated protein PAP / fibrillin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: Plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26070.1); Has 329 Blast hits to 327 proteins in 75 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 242; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJBVeggNOG:ENOG410YI3FEMBL:AC079828EMBL:AK118545EMBL:AY087688EMBL:BT005347EMBL:CP002684
EnsemblPlants:AT1G51110EnsemblPlants:AT1G51110.1entrez:841534GeneID:841534Genevisible:Q8LAP6GO:GO:0009507GO:GO:0009534
GO:GO:0009535GO:GO:0009941GO:GO:0010287GO:GO:0016020Gramene:AT1G51110.1hmmpanther:PTHR31906hmmpanther:PTHR31906:SF11
HOGENOM:HOG000005744InterPro:IPR006843KEGG:ath:AT1G51110OMA:WQLLWSSPaxDb:Q8LAP6Pfam:PF04755Pfam:Q8LAP6
PIR:D96548PIR:E96548PRIDE:Q8LAP6PRO:PR:Q8LAP6Proteomes:UP000006548RefSeq:NP_175522.2STRING:3702.AT1G51110.1
TAIR:AT1G51110UniGene:At.37891UniProt:Q8LAP6
Coordinates (TAIR10) chr1:+:18935380..18937484
Molecular Weight (calculated) 45767.90 Da
IEP (calculated) 8.08
GRAVY (calculated) -0.18
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAVRFYAVE MSLPCLCPCP SSPISLSLCS PRFNLLNTTS RRLGLSRNCR TLRISCSSSS TVTDQTQQSS FNDAELKLID ALIGIQGRGK SASPKQLNDV
101: ESAVKVLEGL EGIQNPTDSD LIEGRWRLMF TTRPGTASPI QRTFTGVDVF TVFQDVYLKA TNDPRVSNIV KFSDFIGELK VEAVASIKDG KRVLFRFDRA
201: AFDLKFLPFK VPYPVPFRLL GDEAKGWLDT TYLSPSGNLR ISRGNKGTTF VLQKETVPRQ KLLATISQDK GVAEAIDEFL ASNSNSAEDN YELLEGSWQM
301: IWSSQMYTDS WIENAANGLM GRQIIEKDGR IKFEVNIIPA FRFSMKGKFI KSESSTYDLK MDDAAIIGGA FGYPVDITNN IELKILYTDE KMRISRGFDN
401: IIFVHIREI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)