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AT1G51090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.898
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Heavy metal transport/detoxification superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: defense response to fungus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT4G16380.1); Has 2168 Blast hits to 1467 proteins in 288 species: Archae - 0; Bacteria - 595; Metazoa - 230; Fungi - 126; Plants - 741; Viruses - 142; Other Eukaryotes - 334 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSDTeggNOG:ENOG41108WEEMBL:AC079828EMBL:AY035097EMBL:AY062944EMBL:CP002684EnsemblPlants:AT1G51090
EnsemblPlants:AT1G51090.1entrez:841532GeneID:841532GO:GO:0030001GO:GO:0046872GO:GO:0050832Gramene:AT1G51090.1
hmmpanther:PTHR22814hmmpanther:PTHR22814:SF117HOGENOM:HOG000091096InterPro:IPR006121KEGG:ath:AT1G51090OMA:NTIIIKVPhylomeDB:Q9C684
PIR:B96548Proteomes:UP000006548RefSeq:NP_175520.1STRING:3702.AT1G51090.1SUPFAM:SSF55008TAIR:AT1G51090UniGene:At.17181
UniProt:Q9C684
Coordinates (TAIR10) chr1:+:18932985..18933747
Molecular Weight (calculated) 19139.50 Da
IEP (calculated) 8.77
GRAVY (calculated) -0.48
Length 171 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEKVVMMKL KVDLNCSKCY KKVKKAIRKF PQITDELFDE KSNTIIIKVV CYDPERLMNK LCYKGDGSIK SIVILEPPKP PQPQPQPPQK PTAPAPAPAQ
101: AQAPALVRPA PVPVLVSSSA PQPMPMWQPY HCGPYYEAQQ YQCYGRPVYE SWGGGRQCCH EDMNSQGCSI M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)