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AT1G51070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic Helix-Loop-Helix 115 (bHLH115); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G54680.1); Has 799 Blast hits to 780 proteins in 147 species: Archae - 10; Bacteria - 89; Metazoa - 90; Fungi - 16; Plants - 475; Viruses - 2; Other Eukaryotes - 117 (source: NCBI BLink).
Protein Annotations
BioGrid:26754EMBL:AC079828EMBL:AF488632EMBL:AY085619
EMBL:BT002433EMBL:BT006273EMBL:CP002684EnsemblPlants:AT1G51070
EnsemblPlants:AT1G51070.1entrez:841529ExpressionAtlas:Q9C682Gene3D:4.10.280.10
GeneID:841529Genevisible:Q9C682GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355hmmpanther:PTHR23042hmmpanther:PTHR23042:SF67
HOGENOM:HOG000238732InParanoid:Q9C682InterPro:IPR011598ncoils:Coil
Pfam:PF00010Pfam:Q9C682Pfscan:PS50888PhylomeDB:Q9C682
PIR:H96547PRIDE:Q9C682PRO:PR:Q9C682PROSITE:PS50888
ProteinModelPortal:Q9C682Proteomes:UP000006548RefSeq:NP_175518.1SMART:SM00353
SMR:Q9C682SUPFAM:SSF47459TAIR:AT1G51070tair10-symbols:bHLH115
UniGene:At.17182UniGene:At.37898UniProt:Q9C682
Coordinates (TAIR10) chr1:+:18928018..18929513
Molecular Weight (calculated) 25513.20 Da
IEP (calculated) 7.14
GRAVY (calculated) -0.79
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVSVE VDGFLCDADV IKEPSSRKRI KTESCTGSNS KACREKQRRD RLNDKFTELS SVLEPGRTPK
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)