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AT1G51060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : histone H2A 10
Curator
Summary (TAIR10)
Encodes HTA10, a histone H2A protein.
Computational
Description (TAIR10)
histone H2A 10 (HTA10); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 13 (TAIR:AT3G20670.1); Has 3904 Blast hits to 3899 proteins in 361 species: Archae - 0; Bacteria - 0; Metazoa - 2554; Fungi - 302; Plants - 612; Viruses - 4; Other Eukaryotes - 432 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5262eggNOG:KOG1756EMBL:AC079828EMBL:AF370188EMBL:AY062945EMBL:CP002684EnsemblPlants:AT1G51060
EnsemblPlants:AT1G51060.1entrez:841528Gene3D:1.10.20.10GeneID:841528Genevisible:Q9C681GO:GO:0000786GO:GO:0000790
GO:GO:0003677GO:GO:0005618GO:GO:0005730GO:GO:0006342Gramene:AT1G51060.1hmmpanther:PTHR23430HOGENOM:HOG000234652
InParanoid:Q9C681InterPro:IPR002119InterPro:IPR007125InterPro:IPR009072InterPro:IPR032454InterPro:IPR032458KEGG:ath:AT1G51060
KO:K11251OMA:HINWSINPaxDb:Q9C681Pfam:PF00125Pfam:PF16211Pfam:Q9C681PhylomeDB:Q9C681
PIR:G96547PRIDE:Q9C681PRINTS:PR00620PRO:PR:Q9C681PROSITE:PS00046ProteinModelPortal:Q9C681Proteomes:UP000006548
RefSeq:NP_175517.1scanprosite:PS00046SMART:SM00414SMR:Q9C681STRING:3702.AT1G51060.1SUPFAM:SSF47113TAIR:AT1G51060
tair10-symbols:HTA10UniGene:At.17184UniGene:At.73912UniProt:Q9C681
Coordinates (TAIR10) chr1:+:18926948..18927443
Molecular Weight (calculated) 13935.00 Da
IEP (calculated) 10.78
GRAVY (calculated) -0.27
Length 132 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGRGKTLGS GSAKKATTRS SKAGLQFPVG RIARFLKKGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)