AT1G50970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.540 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Membrane trafficking VPS53 family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Membrane trafficking VPS53 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Vps53-like, N-terminal (InterPro:IPR007234); BEST Arabidopsis thaliana protein match is: Membrane trafficking VPS53 family protein (TAIR:AT1G50500.1); Has 637 Blast hits to 448 proteins in 205 species: Archae - 2; Bacteria - 36; Metazoa - 221; Fungi - 169; Plants - 87; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18896323..18900268 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64128.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.07 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||
| Length | 569 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKSSGLDFI NQMFPVEASL SCVESFMQKI CDEIRRVDAT ILAVVSQQGN SGTRAKENLN DAICAAEELS HKIQEIKSKA EQTEAMVQDI CSDIKKLDFA 101: KKNITTAVTA LSRLTMLVSA VQQLQVMTSK RQYKEAATQL EAINELCNHF KAYMDLPKIM ELREKLKNIK QILKFHVFSD FSSLGTGTET EELFLLKKLS 201: DSCLVVDALE PSVREELINN FCSRELTSYE QIYVGAELKT LDEIELIYNQ LSCLIRKNQG KWTIFPASWH VPYRLCIQLS RKTRVQVESI LVNLKEKSDV 301: EKLLLELKRT LEFERELEMK FGGGGSIGDD IIGGGGNNSQ KFNFRGMISS CFEPHLTIYI EKEEMELMQL LEKVVQEETW DIEEELGCHS ENSVYLMLLD 401: AHDMKMILLK VPSLARQPEA SALLVKTATA SYVKLVNHQM KRAEAVLKVI ASPIVTVIDT YRALFPEETP MEFQRILVLK GLTKAEQQSI LDDFNNHSSR 501: ITQLSVAAKT PEAHALPLAL TNVAPAVRFK ANSEEVLTRA ASAATTSFMK LYALTGAAKD RPFRKLFNP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)