AT1G50950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.965 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Thioredoxin protein with domain of unknown function (DUF1692) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin domain (InterPro:IPR013766), Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: PDI-like 5-3 (TAIR:AT3G20560.1); Has 4852 Blast hits to 3459 proteins in 323 species: Archae - 0; Bacteria - 20; Metazoa - 2384; Fungi - 872; Plants - 851; Viruses - 3; Other Eukaryotes - 722 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18880465..18884043 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54366.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.85 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||
| Length | 484 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSTSKIKSV DFYRKIPRDL TEASLSGAGL SIVAALAMLF LFGMELSSYL AINTSTSVIV DKSSDGDFLN IDFNISFPAL SCEFASVDVS DVFGTHRLNI 101: SKTIRKVPID PHLRATAEEF HSTSDLHLIN HGDEDHGDNS TYADIPLTGA AFEKFTHHFQ ILVVNFYAPW CYWSNRLKPS WVKASQITRE RYNPGTDDRV 201: LLGSVDCTEE PTLCKSNHIQ GYPSIRIFRR GSGLREDHGN HEHESYYGDR DTDSLVKMVE ELLKPIKKED HKLALDGKSD NAASTFKKAP VSGGCRIEGY 301: VRAKKVPGEL VISAHSGAHS FDASQMNMSH IVTHLTFGTM VSERLWTDMK RLLPYLGQSY DRLNGKSFIN ERQLDANVTI EHYLQIIKTE VISRRSGQEH 401: SLIEEYEYTA HSSVARSYHY PEAKFHFELS PMQVLISENP KSFSHFITNV CAIIGGVFTV AGILDSIFQN TVRMVKKIEL GKNI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)