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AT1G50940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : electron transfer flavoprotein alpha
Curator
Summary (TAIR10)
Encodes the electron transfer flavoprotein ETF alpha, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF beta is At5g43430.1) in Arabidopsis. Mutations of the ETF beta gene results in accelerated senescence and early death compared to wild-type during extended darkness.
Computational
Description (TAIR10)
electron transfer flavoprotein alpha (ETFALPHA); FUNCTIONS IN: copper ion binding; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Electron transfer flavoprotein, alpha subunit, C-terminal (InterPro:IPR014731), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Electron transfer flavoprotein, alpha/beta-subunit, N-terminal (InterPro:IPR014730), Electron transfer flavoprotein, alpha subunit (InterPro:IPR001308), Electron transfer flavoprotein, alpha subunit, C-terminal, conserved site (InterPro:IPR018206); Has 7540 Blast hits to 7533 proteins in 1658 species: Archae - 158; Bacteria - 4517; Metazoa - 162; Fungi - 143; Plants - 45; Viruses - 0; Other Eukaryotes - 2515 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2025eggNOG:KOG3954EMBL:AC079284EMBL:AK117515EMBL:BT004989EMBL:CP002684EnsemblPlants:AT1G50940
EnsemblPlants:AT1G50940.1entrez:841516Gene3D:3.40.50.1220Gene3D:3.40.50.620GeneID:841516Genevisible:Q9C6I6GO:GO:0000062
GO:GO:0003995GO:GO:0005507GO:GO:0005739GO:GO:0005759GO:GO:0009055GO:GO:0033539GO:GO:0050660
GO:GO:0052890GO:GO:0055088Gramene:AT1G50940.1hmmpanther:PTHR10909hmmpanther:PTHR10909:SF299HOGENOM:HOG000247865InParanoid:Q9C6I6
IntAct:Q9C6I6InterPro:IPR001308InterPro:IPR014729InterPro:IPR014730InterPro:IPR014731InterPro:IPR018206InterPro:IPR029035
KEGG:ath:AT1G50940KO:K03522OMA:CCIESIDPaxDb:Q9C6I6Pfam:PF00766Pfam:PF01012Pfam:Q9C6I6
PhylomeDB:Q9C6I6PIR:E96546PIRSF:PIRSF000089PRIDE:Q9C6I6PRO:PR:Q9C6I6PROSITE:PS00696ProteinModelPortal:Q9C6I6
Proteomes:UP000006548Reactome:R-ATH-611105RefSeq:NP_175507.1scanprosite:PS00696SMART:SM00893SMR:Q9C6I6STRING:3702.AT1G50940.1
SUPFAM:SSF52402SUPFAM:SSF52467TAIR:AT1G50940tair10-symbols:ETFALPHAUniGene:At.21003UniGene:At.66968UniProt:Q9C6I6
Coordinates (TAIR10) chr1:-:18878038..18879939
Molecular Weight (calculated) 38410.00 Da
IEP (calculated) 6.93
GRAVY (calculated) 0.09
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRTVLLRAL TKNKFVASNA PRSISISITS LSRCISTLIL AEHESGTIKP QTVSTVVAAN SLGESSSISL LLAGSGSSLQ EAASQAASCH PSVSEVLVAD
101: SDKFEYSLAE PWAKLVDFVR QQGDYSHILA SSSSFGKNIL PRVAALLDVS PITDVVKILG SDQFIRPIYA GNALCTVRYT GAGPCMLTIR STSFPVTPIT
201: ANSESKKATV SQIDLSNFED DSVSKSRYVG RSTQDTERPD LGSARVVITG GRALKSVENF KMIEKLAEKL GGAVGATRAA VDAGYVPNDL QVGQTGKIVA
301: PELYMAFGVS GAIQHLAGIK DSKVIVAVNK DADAPIFQVA DYGLVGDLFE VIPELLEKLP EKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)