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AT1G50910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 1105 Blast hits to 802 proteins in 217 species: Archae - 2; Bacteria - 177; Metazoa - 445; Fungi - 210; Plants - 58; Viruses - 6; Other Eukaryotes - 207 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVPIeggNOG:ENOG4112B33EMBL:AK221447EMBL:CP002684
EnsemblPlants:AT1G50910EnsemblPlants:AT1G50910.1entrez:841513GeneID:841513
Gramene:AT1G50910.1hmmpanther:PTHR34786hmmpanther:PTHR34786:SF1HOGENOM:HOG000084685
InterPro:IPR027951KEGG:ath:AT1G50910ncoils:CoilOMA:FREFYPK
Pfam:PF14780PhylomeDB:Q56Y76Proteomes:UP000006548RefSeq:NP_175504.2
STRING:3702.AT1G50910.1TAIR:AT1G50910UniGene:At.27641UniGene:At.71538
UniGene:At.72433UniProt:Q56Y76
Coordinates (TAIR10) chr1:-:18867083..18869839
Molecular Weight (calculated) 55718.60 Da
IEP (calculated) 4.69
GRAVY (calculated) -0.53
Length 500 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDTQVKALE EKLKSQLSQL ELEQAVFERM VYKNKNQHRR CSYFQYLLKV RRELRLLRTA NMEGMLRPCF HVISGRISKQ KIHVLESLKL KKSDTGKPNI
101: LERLLGALRL LSQMTEPILK AASGISTLLA RSFFIGFSVT FLALLARLRV LVQQILLDAV SVFNSVTSTS LKKQSVKIAQ DGVEVFREFY PKEEECVTLL
201: DCVWKTDKYV LLETLQNSEN SKPMEKNVSE DVTTRDSLVQ YQTSVSSLAE DLSPLLRADN SGATVRESST PIDEAASSKT NIGLQPEDSE NPEDATTRDC
301: SVQYETFVSP LGEDLSPLLE ADNSGVTLRE SSTPIAEAAS SKTNNASQPE DSENLEDTTT KDCSIQYQTF VSPLGEDITP SPLPDADENG YDTATESLTP
401: IAEAASSKTN DESQTEDMEK VEDESTNPVS SAKINRDTVK PRFRATKVAF LPVKRPSSAI TPNTIEQPPL KKQETGEKDK KEEDGFYNLL IRGTQKDSLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)