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AT1G50750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.951
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant mobile domain protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant mobile domain protein family; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557); BEST Arabidopsis thaliana protein match is: Plant mobile domain protein family (TAIR:AT1G50790.1); Has 1370 Blast hits to 1171 proteins in 144 species: Archae - 2; Bacteria - 53; Metazoa - 236; Fungi - 44; Plants - 477; Viruses - 0; Other Eukaryotes - 558 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ6XeggNOG:ENOG410YCGIEMBL:AC079027EMBL:CP002684EnsemblPlants:AT1G50750EnsemblPlants:AT1G50750.1entrez:841497
GeneID:841497Gramene:AT1G50750.1hmmpanther:PTHR16007hmmpanther:PTHR16007:SF20HOGENOM:HOG000149124InterPro:IPR006904InterPro:IPR019557
KEGG:ath:AT1G50750ncoils:CoilOMA:RENNESHPANTHER:PTHR16007Pfam:PF10536PhylomeDB:Q9C6T8PIR:D96544
Proteomes:UP000006548RefSeq:NP_175490.1TAIR:AT1G50750UniGene:At.27856UniProt:Q9C6T8
Coordinates (TAIR10) chr1:-:18809184..18812050
Molecular Weight (calculated) 92034.10 Da
IEP (calculated) 5.82
GRAVY (calculated) -0.66
Length 816 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGSEAMLPC QNRSAPSLHS NALSKSVSYW GWRFANTKFE SWAIEMAALH EPTWREAGIF EAVMASIYRI PKNPDLILGI AEKWCPYTKT FVFPWGETAV
101: TLEDVMVLSG FSVLGSPVFA TLDSSGKEVK AKLDKEWKKI KKAKVNFVTQ VAWMERFMDS GDELEHVAFL VLWLNYFVFP SRLYHLYKAV FPIVVHLSTG
201: TRIALALAVL AHLYAELIAS SLDMGEVQGT TVKPNPLLKG EPRLALWHGL LQRTSDARQI LDSLKIDTVW IPASPNLDVE FVSFARCIKV SQLVGIDNVE
301: HYFPNRVASQ FGMLQDVPCA VNQNNLSQEA AWNDYNKPIN DLALFIPSRS AIPRVTPTFC EWWRRSFPEF QTSSKDKDAN ESAETLKARD RKSLGADTSS
401: KMNRTRKDEM NITDDSNKRR NYNKQARDKR LKYMKQAREK RLQYIKQARK NGNNESGSKV NRTSKDGMKI AEDFDKRRKY MKRVRENNES HMGQCHTHVH
501: SDNNDEDDNL SIAQFLRLNK KKYSDVRNSG RDASEPLGKI SRVEADNNDL GTFQKLASIR DEIVPPSEIA HRNGETDEAG SRAGTNMDES PFDENNSSEP
601: PFCADRGVVD IVVSPPETRQ ACDDELDVNE SNADMFDDGS KQPKCLLHED GIIAVEEPSS DEKLCSSEAE KEDVVADDDT MNNIEPVPHQ QHATRGTNRD
701: ETSRACKSVV LSPTDESNIQ IAVGEGSQGQ DCGLQDNGLG SDETSKSNEQ LEDLEKRKND FGEGDAANDS YEKRLEELKV LALSLKEHIT MAQRNLASLK
801: ERSAMRQRKI EAARWI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)