AT1G50750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.951 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant mobile domain protein family | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant mobile domain protein family; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557); BEST Arabidopsis thaliana protein match is: Plant mobile domain protein family (TAIR:AT1G50790.1); Has 1370 Blast hits to 1171 proteins in 144 species: Archae - 2; Bacteria - 53; Metazoa - 236; Fungi - 44; Plants - 477; Viruses - 0; Other Eukaryotes - 558 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18809184..18812050 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92034.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.82 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||
| Length | 816 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKGSEAMLPC QNRSAPSLHS NALSKSVSYW GWRFANTKFE SWAIEMAALH EPTWREAGIF EAVMASIYRI PKNPDLILGI AEKWCPYTKT FVFPWGETAV 101: TLEDVMVLSG FSVLGSPVFA TLDSSGKEVK AKLDKEWKKI KKAKVNFVTQ VAWMERFMDS GDELEHVAFL VLWLNYFVFP SRLYHLYKAV FPIVVHLSTG 201: TRIALALAVL AHLYAELIAS SLDMGEVQGT TVKPNPLLKG EPRLALWHGL LQRTSDARQI LDSLKIDTVW IPASPNLDVE FVSFARCIKV SQLVGIDNVE 301: HYFPNRVASQ FGMLQDVPCA VNQNNLSQEA AWNDYNKPIN DLALFIPSRS AIPRVTPTFC EWWRRSFPEF QTSSKDKDAN ESAETLKARD RKSLGADTSS 401: KMNRTRKDEM NITDDSNKRR NYNKQARDKR LKYMKQAREK RLQYIKQARK NGNNESGSKV NRTSKDGMKI AEDFDKRRKY MKRVRENNES HMGQCHTHVH 501: SDNNDEDDNL SIAQFLRLNK KKYSDVRNSG RDASEPLGKI SRVEADNNDL GTFQKLASIR DEIVPPSEIA HRNGETDEAG SRAGTNMDES PFDENNSSEP 601: PFCADRGVVD IVVSPPETRQ ACDDELDVNE SNADMFDDGS KQPKCLLHED GIIAVEEPSS DEKLCSSEAE KEDVVADDDT MNNIEPVPHQ QHATRGTNRD 701: ETSRACKSVV LSPTDESNIQ IAVGEGSQGQ DCGLQDNGLG SDETSKSNEQ LEDLEKRKND FGEGDAANDS YEKRLEELKV LALSLKEHIT MAQRNLASLK 801: ERSAMRQRKI EAARWI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)