suba logo
AT1G50660.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIQ8eggNOG:ENOG410Y9JNEMBL:AC012561EMBL:AC079279EMBL:CP002684EnsemblPlants:AT1G50660EnsemblPlants:AT1G50660.1
entrez:841488GeneID:841488Gramene:AT1G50660.1hmmpanther:PTHR31071hmmpanther:PTHR31071:SF2HOGENOM:HOG000241044KEGG:ath:AT1G50660
ncoils:CoilOMA:PHSAMEGPhylomeDB:Q9LPT5PIR:C96543Proteomes:UP000006548RefSeq:NP_175481.1SMR:Q9LPT5
STRING:3702.AT1G50660.1TAIR:AT1G50660UniGene:At.15783UniGene:At.71529UniGene:At.75219UniProt:Q9LPT5
Coordinates (TAIR10) chr1:+:18771386..18774385
Molecular Weight (calculated) 82142.70 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.93
Length 725 amino acids
Sequence (TAIR10)
(BLAST)
001: MKVTGKPYST ATLPAFESDK NLFSHGPDLR AIQRATTVTK RRARNPSLTR QRRSGPSGGR RSRPETPLLK WKVEDRNKER SGVVEDDDYE DDNHQVARSE
101: TTRRKDRRKI ARPVSVRKLA AGLWRLQVPD ASSSGGERKG KEGLGFQGNG GYMGVPYLYH HSDKPSGGQS NKIRQNPSTI ATTKNGFLCK LEPSMPFPHS
201: AMEGATKWDP VCLDTMEEVH QIYSNMKRID QQVNAVSLVS SLEAELEEAH ARIEDLESEK RSHKKKLEQF LRKVSEERAA WRSREHEKVR AIIDDMKTDM
301: NREKKTRQRL EIVNHKLVNE LADSKLAVKR YMQDYEKERK ARELIEEVCD ELAKEIGEDK AEIEALKRES MSLREEVDDE RRMLQMAEVW REERVQMKLI
401: DAKVALEERY SQMNKLVGDL ESFLRSRDIV TDVKEVREAE LLRETAASVN IQEIKEFTYV PANPDDIYAV FEEMNLGEAH DREMEKSVAY SPISHDSKVH
501: TVSLDANMMN KKGRHSDAYT HQNGDIEEDD SGWETVSHLE EQGSSYSPDG SIPSVNNKNH NHRHSNASSG GTESLGKVWD DTMTPTTEIS EVCSIPRRSS
601: KKVSSIAKLW RSTGASNGDR DSNYKVISME GMNGGRVSNG RKSSAGMVSP DRVSSKGGFS PMMDLVGQWN SSPESANHPH VNRGGMKGCI EWPRGAQKSS
701: LKSKLIEARI ESQKVQLKHV LKQRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)