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AT1G50575.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Putative lysine decarboxylase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Putative lysine decarboxylase family protein; FUNCTIONS IN: carboxy-lyase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); Has 3310 Blast hits to 3310 proteins in 987 species: Archae - 6; Bacteria - 2367; Metazoa - 4; Fungi - 47; Plants - 208; Viruses - 0; Other Eukaryotes - 678 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1611eggNOG:ENOG410IFNIEMBL:AY059883EMBL:AY093371EMBL:CP002684EnsemblPlants:AT1G50575EnsemblPlants:AT1G50575.1
entrez:841479GeneID:841479Gramene:AT1G50575.1hmmpanther:PTHR31208hmmpanther:PTHR31208:SF1HOGENOM:HOG000240201IntAct:Q93XW9
InterPro:IPR031100KEGG:ath:AT1G50575OMA:LLDCTSWPfam:PF03641PhylomeDB:Q93XW9Proteomes:UP000006548RefSeq:NP_564577.1
SMR:Q93XW9STRING:3702.AT1G50575.1SUPFAM:SSF102405TAIR:AT1G50575UniGene:At.23059UniProt:Q93XW9
Coordinates (TAIR10) chr1:-:18728862..18730296
Molecular Weight (calculated) 33973.70 Da
IEP (calculated) 6.40
GRAVY (calculated) -0.18
Length 306 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVSMLDSSW SFRLSSKMSP SPTQKLASSL TERDPISLNL RFDHSIRAYS ARALKCRSVK SEDFVERSSP FEVKKELEIC FDLVHRLGRG IVYLGSARIP
101: PNHSHYLQAQ ELSREAATLL DCTTWSGAGP GLMDAVTEGA LEAEKPVGGI KIEKEAGEWT ASKFHPYLPP QNYHTCRFFS ARKHGLVDAV IRNNVSEKTA
201: IIALPGGIGT LDEMFEILAL IQLERIGSAL PVPFIVMNYD AFYSKLLEFI ETCENLGTVS KGEVSALWKV CNNNFEALTY LAEFYDLPDG SAKLETELRK
301: TTPTRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)