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AT1G50570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.721
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G55530.2); Has 225 Blast hits to 222 proteins in 54 species: Archae - 0; Bacteria - 19; Metazoa - 23; Fungi - 31; Plants - 136; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF02eggNOG:ENOG410YHFCEMBL:AC012561EMBL:AK228967EMBL:BT028972EMBL:CP002684EnsemblPlants:AT1G50570
EnsemblPlants:AT1G50570.1EnsemblPlants:AT1G50570.2entrez:841478Gene3D:2.60.40.150GeneID:841478Gramene:AT1G50570.1Gramene:AT1G50570.2
hmmpanther:PTHR31208hmmpanther:PTHR31208:SF2InterPro:IPR000008KEGG:ath:AT1G50570OMA:VMTISAMPfam:PF00168PhylomeDB:Q9LPS7
Proteomes:UP000006548RefSeq:NP_001031166.1RefSeq:NP_564576.1SMART:SM00239SMR:Q9LPS7SUPFAM:SSF49562TAIR:AT1G50570
UniGene:At.28017UniGene:At.48298UniProt:Q9LPS7
Coordinates (TAIR10) chr1:-:18726400..18727566
Molecular Weight (calculated) 42154.80 Da
IEP (calculated) 4.18
GRAVY (calculated) -0.34
Length 388 amino acids
Sequence (TAIR10)
(BLAST)
001: MESPHSEASI VNGSIHLNGS GETKTKNIVM SSDSDSFIGV LEVFVHQARD IHNICIYHKQ DVYAKLCLTN DPENSLSTKI INGGGQNPVF DDTLQFDVKN
101: LDCSLKCEIF MMSRVKNYLE DQLLGFSLVP LSEVIVRNGK LEKEFSLSST DLYHSPAGFV ELSLSYAGDS PDVMHIPAVP TADETELAPI EFDESEFLDP
201: KIVCENNQMV SKYFSTTCSD SDDFASSETG FVEVNSILSA VVETAVDEAA PANSVSTNGI SSPSTAVSSG SSGTHDVSKQ SSEGNNSDSE QEAKKPTDII
301: KSGDLDKTDE EAVVKPVLTV NIEPEQKVVQ QDIVDMYTKS LQQFTESLAK MKLPLDIDSP TQSENSSSSQ QTPKSASSRV FYGSRAFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)