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AT1G50500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Membrane trafficking VPS53 family protein
Curator
Summary (TAIR10)
encodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress.
Computational
Description (TAIR10)
HEAT-INTOLERANT 1 (HIT1); CONTAINS InterPro DOMAIN/s: Vps53-like, N-terminal (InterPro:IPR007234); BEST Arabidopsis thaliana protein match is: Membrane trafficking VPS53 family protein (TAIR:AT1G50970.1); Has 898 Blast hits to 860 proteins in 251 species: Archae - 12; Bacteria - 82; Metazoa - 379; Fungi - 169; Plants - 68; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).
Protein Annotations
BioGrid:26697eggNOG:ENOG410XNMTeggNOG:KOG2180EMBL:AC012561EMBL:AC079279EMBL:AK228745EMBL:CP002684
EnsemblPlants:AT1G50500EnsemblPlants:AT1G50500.1EnsemblPlants:AT1G50500.2entrez:841472ExpressionAtlas:Q0WQF4GeneID:841472Genevisible:Q0WQF4
GO:GO:0000139GO:GO:0000938GO:GO:0007009GO:GO:0010008GO:GO:0010286GO:GO:0015031hmmpanther:PTHR12820
hmmpanther:PTHR12820:SF0HOGENOM:HOG000265899InterPro:IPR007234iPTMnet:Q0WQF4KEGG:ath:AT1G50500ncoils:CoilOMA:TWDIEEG
PaxDb:Q0WQF4Pfam:PF04100Pfam:Q0WQF4PhylomeDB:Q0WQF4PIR:E96541PRIDE:Q0WQF4PRO:PR:Q0WQF4
ProteinModelPortal:Q0WQF4Proteomes:UP000006548RefSeq:NP_001185188.1RefSeq:NP_564573.3STRING:3702.AT1G50500.2TAIR:AT1G50500tair10-symbols:ATVPS53
tair10-symbols:HIT1tair10-symbols:VPS53UniGene:At.23430UniProt:Q0WQF4
Coordinates (TAIR10) chr1:-:18708217..18715597
Molecular Weight (calculated) 92534.90 Da
IEP (calculated) 6.15
GRAVY (calculated) -0.31
Length 828 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKSSALEYI NQMFPTEASL TGVEPLMQKI QGEIRRVDAS ILSAVRQQSN SGTKAKEDLA DATRAVEELS HKIQEIKSKA EQSEAMVQEI CRDIKKLDFA
101: KKNITTTITA LHRLTMLVSA VEQLQVMASK RQYKEAAAQL EAVNQLCNHF EAYRDVPKIT ELREKLNNIK QILKSHVFSD FSSLGTGKET EETNLLQKLS
201: DSCLVVDALE PSVREELVNN FCSRELTSYE QIFEGAELAK LDKTERRYAW IKRRIRTNEE IWKIFPASWH VPYRLCIQFC KQTRKQVESI LVNMKEKPVV
301: AILLLALQST VEFEKELEKK FGGGVPTKDI EDDIEEIGTW EDNSQNISKI RKKYEKKFAA SQETEENGFQ QEKTGNKDLS VTGAGFNFRG MISSCFEPHL
401: TPYIELEEKT LMDDLEKIVQ EESWDVEDGS QNNVLSSSTQ LFSNIKKSLK RCNTLSKNQT LFNLFKVFQR VLKAYATKLF FKLPKGGTGI VAAATGMDGQ
501: IKVSERDERV ICYIVNSAEY CHKTSGELAE NVSEIIDPHY ADGVDMSEVQ DEFSAVITKA LVTLVLGLET KFDTEMAVMT RVPWSTLESV GDQSGYVNGI
601: NTVLSGSIPV LGKLLTPVYF QFFLDKLASS LGPRFYANIF RCKQLSETGA QQMLLDTQAV KSILLEIPSL ARQTSTAASY SKFVSREMSR AEALLKVILS
701: PIDSVADTYR ALFPEGTPME FQRILELKGL KKADQQSILD DFNKHGPGFT QQSVAAAMPQ PMPTPPAPPL AITNPATAAG FIANSEDVLT RAAALGRGAA
801: STGFKKFIAL TEAAKDRKDG PLRRLFNA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)