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AT1G50470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box associated ubiquitination effector family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G17560.1); Has 247 Blast hits to 247 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 247; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC079279EMBL:CP002684EnsemblPlants:AT1G50470EnsemblPlants:AT1G50470.1entrez:841469GeneID:841469Gramene:AT1G50470.1
InterPro:IPR006527KEGG:ath:AT1G50470Pfam:PF07734PhylomeDB:Q9C6Q5PIR:B96541Proteomes:UP000006548RefSeq:NP_175464.1
TAIR:AT1G50470UniGene:At.52115UniProt:Q9C6Q5
Coordinates (TAIR10) chr1:-:18700000..18700444
Molecular Weight (calculated) 13623.50 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.05
Length 121 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEFLDVVSP EDDLVSTGKS LKGNEVNDIK ALSVVREEHL SLLYQSAKKL KMDIRVTNEI ETVDLKPHGC LFSSSLSFHI DEEKKVAVCG EKVIYNKIYI
101: VGEDKYTRYI DLLVSVALMV G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)