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AT1G50450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Saccharopine dehydrogenase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Saccharopine dehydrogenase ; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Saccharopine dehydrogenase / Homospermidine synthase (InterPro:IPR005097), NAD(P)-binding domain (InterPro:IPR016040); Has 1549 Blast hits to 1547 proteins in 500 species: Archae - 22; Bacteria - 980; Metazoa - 33; Fungi - 88; Plants - 49; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1748eggNOG:ENOG410IGP1EMBL:AY039543EMBL:AY097361EMBL:CP002684EnsemblPlants:AT1G50450EnsemblPlants:AT1G50450.1
entrez:841467Gene3D:3.40.50.720GeneID:841467GO:GO:0009507GO:GO:0009534GO:GO:0016491Gramene:AT1G50450.1
hmmpanther:PTHR12286hmmpanther:PTHR12286:SF7HOGENOM:HOG000012826IntAct:Q94BZ0InterPro:IPR005097InterPro:IPR016040KEGG:ath:AT1G50450
OMA:VRSTHEVPfam:PF03435PhylomeDB:Q94BZ0Proteomes:UP000006548RefSeq:NP_564570.1SMR:Q94BZ0STRING:3702.AT1G50450.1
SUPFAM:SSF51735TAIR:AT1G50450UniGene:At.38025UniGene:At.48296UniProt:Q94BZ0
Coordinates (TAIR10) chr1:-:18687902..18690348
Molecular Weight (calculated) 46562.30 Da
IEP (calculated) 8.27
GRAVY (calculated) -0.06
Length 428 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRALLLQPY RATVRAASSR ETQYDGVPEV KFSDPSRNYR VLVLGGTGRV GGSTATALSK LCPELKIVVG GRNREKGEAM VAKLGENSEF SQVDINDAKM
101: LETSLRDVDL VVHAAGPFQQ APRCTVLEAA IKTKTAYLDV CDDTSYAFRA KSLEAEAIAA NIPALTTAGI YPGVSNVMAA EMVAAARSED KGKPEKLRFS
201: YYTAGTGGAG PTILATSFLL LGEEVTAYKQ GEKVKLRPYS GMITVDFGKG IRKRDVYLLN LPEVRSTHEV LGVPTVVARF GTAPFFWNWG MEIMTKLLPS
301: EVLRDRTKVQ QMVELFDPVV RAMDGFAGER VSMRVDLECS DGRTTVGLFS HKKLSVSVGV STAAFVAAML EGSTQPGVWF PEEPQGIAVE AREVLLKRAS
401: QGTFNFILNK PPWMVETEPK EVVLGIYV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)