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AT1G50420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : scarecrow-like 3
Curator
Summary (TAIR10)
Encodes a scarecrow-like protein (SCL3) Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).
Computational
Description (TAIR10)
scarecrow-like 3 (SCL3); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCARECROW-like 21 (TAIR:AT2G04890.1); Has 3106 Blast hits to 2488 proteins in 309 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 3100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:26689DIP:DIP-60306NeggNOG:ENOG410IGS2eggNOG:ENOG410XRSH
EMBL:AC012561EMBL:AF036301EMBL:AY056154EMBL:AY091260
EMBL:CP002684EnsemblPlants:AT1G50420EnsemblPlants:AT1G50420.1entrez:841464
GeneID:841464Genevisible:Q9LPR8GO:GO:0000989GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009739
Gramene:AT1G50420.1hmmpanther:PTHR31636hmmpanther:PTHR31636:SF48HOGENOM:HOG000238577
InParanoid:Q9LPR8IntAct:Q9LPR8InterPro:IPR005202InterPro:IPR030008
KEGG:ath:AT1G50420OMA:SVSSWRCPANTHER:PTHR31636:SF48PaxDb:Q9LPR8
Pfam:PF03514Pfam:Q9LPR8Pfscan:PS50985PhylomeDB:Q9LPR8
PIR:E96540PIR:T51235PRIDE:Q9LPR8PRO:PR:Q9LPR8
PROSITE:PS50985ProteinModelPortal:Q9LPR8Proteomes:UP000006548RefSeq:NP_175459.1
STRING:3702.AT1G50420.1TAIR:AT1G50420tair10-symbols:SCL-3tair10-symbols:SCL3
UniGene:At.14826UniProt:Q9LPR8
Coordinates (TAIR10) chr1:-:18678177..18679625
Molecular Weight (calculated) 54155.80 Da
IEP (calculated) 6.40
GRAVY (calculated) -0.27
Length 482 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)