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AT1G50410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT3G20010.1); Has 25748 Blast hits to 15874 proteins in 1868 species: Archae - 87; Bacteria - 8136; Metazoa - 6127; Fungi - 5385; Plants - 2378; Viruses - 150; Other Eukaryotes - 3485 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2689-MONOMEREC:3.6.4.-eggNOG:COG0553EMBL:AC007980EMBL:AC012561EMBL:AY039939EMBL:AY142669
EMBL:CP002684EnsemblPlants:AT1G50410EnsemblPlants:AT1G50410.1entrez:841463Gene3D:3.30.40.10Gene3D:3.40.50.300GeneID:841463
GO:GO:0003677GO:GO:0004386GO:GO:0005524GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0006355
GO:GO:0008270GO:GO:0016568GO:GO:0031047GO:GO:0048025Gramene:AT1G50410.1hmmpanther:PTHR10799hmmpanther:PTHR10799:SF777
HOGENOM:HOG000241058InterPro:IPR000330InterPro:IPR001650InterPro:IPR001841InterPro:IPR013083InterPro:IPR014001InterPro:IPR017907
InterPro:IPR027417KEGG:ath:AT1G50410OMA:ESSPICCPfam:PF00176Pfam:PF00271Pfam:PF13920Pfscan:PS50089
Pfscan:PS51192Pfscan:PS51194PhylomeDB:Q94BR5PIR:D96540PROSITE:PS00518PROSITE:PS50089PROSITE:PS51192
PROSITE:PS51194ProteinModelPortal:Q94BR5Proteomes:UP000006548RefSeq:NP_564568.1scanprosite:PS00518SMART:SM00184SMART:SM00487
SMART:SM00490SMR:Q94BR5STRING:3702.AT1G50410.1SUPFAM:SSF52540SUPFAM:SSF57850TAIR:AT1G50410UniGene:At.15795
UniProt:Q94BR5
Coordinates (TAIR10) chr1:+:18672828..18677365
Molecular Weight (calculated) 108117.00 Da
IEP (calculated) 7.26
GRAVY (calculated) -0.55
Length 981 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSAIDISSD SDVEIQETRT RPQHPPRIAE GSHRRDLSTL RPHFLSGSSS GANGHTKTGL TNLDSRNGFE SKPLPRAEHH THIPGNGSIV TSRIPNISVG
101: DYEKFSSQQA FKRTHPPTFS RPPFPPRPDI GTSNGNASHF RGGAHDDLGM GRVTNGTRIL PPSVAHGTSA SPSHFNGLSD PMHRNGIGEE RNSENDERLI
201: YQAALQELNQ PKSEVDLPAG LLSVPLMKHQ KIALAWMFQK ETNSLHCMGG ILADDQGLGK TVSTIALILK QMHEAKLKSK NSGNQEAEAL DLDADDESEN
301: AFEKPESKAS NGSGVNGDSG IKKAKGEEAS TSTRKFNRKR PAAGTLIVCP ASVVRQWARE LDEKVTDEAK LSVLIYHGGN RTKDPIELAK YDVVMTTYAI
401: VSNEVPKQPL VDDDENDEKN SEKYGLASGF SINKKRKNVV GTTKKSKKKK GNNNAGDSSD PDSGTLAKVG WFRVVLDEAQ TIKNHRTQVA RACCGLRAKR
501: RWCLSGTPIQ NTIDDLYSYF RFLKYDPYAV YKSFCHQIKG PISRNSLQGY KKLQAVLRAI MLRRTKGTLL DGQPIINLPP KTINLSQVDF SVEERSFYVK
601: LESDSRSQFK AYAAAGTLNQ NYANILLMLL RLRQACDHPQ LVKRYNSDSV GKVSEEAVKK LPKEDLVSLL SRLESSPICC VCHDPPEDPV VTLCGHIFCY
701: QCVSDYITGD EDTCPAPRCR EQLAHDVVFS KSTLRSCVAD DLGCSSSEDN SHDKSVFQNG EFSSSKIKAV LDILQSLSNQ GTSNSTQNGQ MASSSQQPND
801: DDDDDDDDVT IVEKTSLKST PSNGGPIKTI IFSQWTGMLD LVELSLIENS IEFRRLDGTM SLIARDRAVK EFSNDPDVKV MIMSLKAGNL GLNMIAACHV
901: ILLDLWWNPT TEDQAIDRAH RIGQTRPVTV TRITIKNTVE DRILALQEEK RKMVASAFGE DHGGSSATRL TVDDLKYLFM V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)