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AT1G50370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.642
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Calcineurin-like metallo-phosphoesterase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: flower-specific, phytochrome-associated protein phosphatase 3 (TAIR:AT3G19980.1); Has 6872 Blast hits to 6704 proteins in 524 species: Archae - 81; Bacteria - 295; Metazoa - 2372; Fungi - 1410; Plants - 974; Viruses - 10; Other Eukaryotes - 1730 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G50370-MONOMERBioGrid:26684EC:3.1.3.16eggNOG:ENOG410XNR9
eggNOG:KOG0373EMBL:AC007980EMBL:AF428374EMBL:AK226232
EMBL:AY087422EMBL:BT020404EMBL:CP002684EnsemblPlants:AT1G50370
EnsemblPlants:AT1G50370.1entrez:841459Gene3D:3.60.21.10GeneID:841459
Genevisible:Q9SX52GO:GO:0004721GO:GO:0005737GO:GO:0046872
Gramene:AT1G50370.1hmmpanther:PTHR11668hmmpanther:PTHR11668:SF289HOGENOM:HOG000172696
InParanoid:Q9SX52IntAct:Q9SX52InterPro:IPR004843InterPro:IPR006186
InterPro:IPR029052KEGG:ath:AT1G50370KO:K15498OMA:DERIFCV
PaxDb:Q9SX52Pfam:PF00149Pfam:Q9SX52PhylomeDB:Q9SX52
PIR:H96539PRIDE:Q9SX52PRINTS:PR00114PRO:PR:Q9SX52
PROSITE:PS00125ProteinModelPortal:Q9SX52Proteomes:UP000006548RefSeq:NP_175454.1
scanprosite:PS00125SMART:SM00156SMR:Q9SX52STRING:3702.AT1G50370.1
SUPFAM:SSF56300TAIR:AT1G50370UniGene:At.18962UniGene:At.5940
UniProt:Q9SX52
Coordinates (TAIR10) chr1:+:18658894..18661672
Molecular Weight (calculated) 34821.30 Da
IEP (calculated) 4.70
GRAVY (calculated) -0.29
Length 303 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLDQWISKV KDGQHLSEDE LQLLCEYVKE ILIEESNVQP VNSPVTVCGD IHGQFHDLMK LFQTGGHVPE TNYIFMGDFV DRGYNSLEVF TILLLLKARH
101: PANITLLRGN HESRQLTQVY GFYDECQRKY GNANAWRYCT DVFDYLTLSA IIDGTVLCVH GGLSPDVRTI DQIRLIERNC EIPHEGPFCD LMWSDPEDIE
201: TWAVSPRGAG WLFGSRVTTE FNHINNLDLV CRAHQLVQEG LKYMFQDKGL VTVWSAPNYC YRCGNVASIL SFNDNMEREV KFFTETEENN QMRGPRTGVP
301: YFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)