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AT1G50320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : thioredoxin X
Curator
Summary (TAIR10)
encodes a prokaryotic thioredoxin
Computational
Description (TAIR10)
thioredoxin X (THX); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: positive regulation of catalytic activity; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y1 (TAIR:AT1G76760.1); Has 20779 Blast hits to 19654 proteins in 2968 species: Archae - 276; Bacteria - 11383; Metazoa - 2412; Fungi - 1075; Plants - 1697; Viruses - 7; Other Eukaryotes - 3929 (source: NCBI BLink).
Protein Annotations
BioGrid:26679eggNOG:COG0526eggNOG:KOG0910EMBL:AC007980EMBL:AF095753EMBL:AF324698EMBL:AF326860
EMBL:AF339683EMBL:AF386924EMBL:AY086205EMBL:BT000355EMBL:CP002684EnsemblPlants:AT1G50320EnsemblPlants:AT1G50320.1
entrez:841454Gene3D:3.40.30.10GeneID:841454Genevisible:Q8LD49GO:GO:0000103GO:GO:0006457GO:GO:0006662
GO:GO:0008047GO:GO:0009507GO:GO:0009570GO:GO:0015035GO:GO:0016671GO:GO:0034599GO:GO:0043085
GO:GO:0045454GO:GO:0055114Gramene:AT1G50320.1hmmpanther:PTHR10438hmmpanther:PTHR10438:SF270HOGENOM:HOG000292977InParanoid:Q8LD49
IntAct:Q8LD49InterPro:IPR005746InterPro:IPR012336InterPro:IPR013766iPTMnet:Q8LD49KEGG:ath:AT1G50320OMA:YGLPHFI
PANTHER:PTHR10438PaxDb:Q8LD49Pfam:PF00085Pfam:Q8LD49Pfscan:PS51352PhylomeDB:Q8LD49PIR:E96539
PRIDE:Q8LD49PRO:PR:Q8LD49PROSITE:PS51352ProteinModelPortal:Q8LD49Proteomes:UP000006548Reactome:R-ATH-3299685RefSeq:NP_564566.1
SMR:Q8LD49STRING:3702.AT1G50320.1SUPFAM:SSF52833TAIR:AT1G50320tair10-symbols:ATHXtair10-symbols:ATXtair10-symbols:THX
UniGene:At.11799UniProt:Q8LD49
Coordinates (TAIR10) chr1:-:18638606..18639464
Molecular Weight (calculated) 19648.80 Da
IEP (calculated) 9.20
GRAVY (calculated) 0.04
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSIVSSSTI LMRSYLTPPV RSCSPATSVS VKPLSSVQVT SVAANRHLLS LSSGARRTRK SSSSVIRCGG IKEIGESEFS STVLESAQPV LVEFVATWCG
101: PCKLIYPAME ALSQEYGDKL TIVKIDHDAN PKLIAEFKVY GLPHFILFKD GKEVPGSRRE GAITKAKLKE YIDGLLNSIS VA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)