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AT1G50300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TBP-associated factor 15
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TBP-associated factor 15 (TAF15); FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TBP-associated factor 15B (TAIR:AT5G58470.2); Has 11021 Blast hits to 6677 proteins in 384 species: Archae - 8; Bacteria - 254; Metazoa - 5533; Fungi - 1360; Plants - 1875; Viruses - 14; Other Eukaryotes - 1977 (source: NCBI BLink).
Protein Annotations
BioGrid:26677eggNOG:ENOG410IP56eggNOG:ENOG4111Q2FEMBL:AC007980EMBL:AF367295EMBL:AY091686EMBL:AY463618
EMBL:CP002684EnsemblPlants:AT1G50300EnsemblPlants:AT1G50300.1entrez:841452Gene3D:3.30.70.330Gene3D:4.10.1060.10GeneID:841452
Genevisible:Q9AST1GO:GO:0000166GO:GO:0003723GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0008270
Gramene:AT1G50300.1hmmpanther:PTHR12999HOGENOM:HOG000030536InParanoid:Q9AST1IntAct:Q9AST1InterPro:IPR000504InterPro:IPR001876
InterPro:IPR012677KEGG:ath:AT1G50300ncoils:CoilOMA:KERDYDYPaxDb:Q9AST1Pfam:PF00076Pfam:PF00641
Pfam:Q9AST1Pfscan:PS50102Pfscan:PS50199PhylomeDB:Q9AST1PIR:C96539PRIDE:Q9AST1PRO:PR:Q9AST1
PROSITE:PS01358PROSITE:PS50102PROSITE:PS50199ProteinModelPortal:Q9AST1Proteomes:UP000006548Reactome:R-ATH-72163RefSeq:NP_564565.1
scanprosite:PS01358SMART:SM00360SMART:SM00547SMR:Q9AST1STRING:3702.AT1G50300.1SUPFAM:SSF54928SUPFAM:SSF90209
TAIR:AT1G50300tair10-symbols:TAF15UniGene:At.28724UniProt:Q9AST1
Coordinates (TAIR10) chr1:-:18628818..18631662
Molecular Weight (calculated) 41278.20 Da
IEP (calculated) 7.98
GRAVY (calculated) -1.27
Length 372 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)