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AT1G50250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FTSH protease 1
Curator
Summary (TAIR10)
encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.
Computational
Description (TAIR10)
FTSH protease 1 (FTSH1); FUNCTIONS IN: metallopeptidase activity, protein binding, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: photosystem II repair, PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid lumen, chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT5G42270.1); Has 39789 Blast hits to 37355 proteins in 3308 species: Archae - 1512; Bacteria - 16133; Metazoa - 4957; Fungi - 3666; Plants - 3305; Viruses - 34; Other Eukaryotes - 10182 (source: NCBI BLink).
Protein Annotations
BioGrid:26672BRENDA:3.4.24.B20EC:3.4.24.-eggNOG:COG0465eggNOG:KOG0731EMBL:AC007980EMBL:AY091095
EMBL:AY123034EMBL:CP002684EMBL:X99808EMBL:Y12780EnsemblPlants:AT1G50250EnsemblPlants:AT1G50250.1entrez:841447
Gene3D:3.40.50.300GeneID:841447Genevisible:Q39102GO:GO:0004176GO:GO:0004222GO:GO:0005524GO:GO:0006508
GO:GO:0007275GO:GO:0008237GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009941GO:GO:0010205
GO:GO:0010206GO:GO:0010304GO:GO:0016020GO:GO:0016021GO:GO:0031977GO:GO:0046872Gramene:AT1G50250.1
HAMAP:MF_01458hmmpanther:PTHR23076hmmpanther:PTHR23076:SF33HOGENOM:HOG000217276InParanoid:Q39102InterPro:IPR000642InterPro:IPR003593
InterPro:IPR003959InterPro:IPR003960InterPro:IPR005936InterPro:IPR027417iPTMnet:Q39102KEGG:ath:AT1G50250KO:K03798
MEROPS:M41.020MINT:MINT-8063674OMA:VDNRRASPaxDb:Q39102Pfam:PF00004Pfam:PF01434Pfam:Q39102
PhylomeDB:Q39102PIR:G96538PRIDE:Q39102PRO:PR:Q39102PROSITE:PS00674ProteinModelPortal:Q39102Proteomes:UP000006548
RefSeq:NP_564563.1scanprosite:PS00674SMART:SM00382SMR:Q39102STRING:3702.AT1G50250.1SUPFAM:SSF140990SUPFAM:SSF52540
TAIR:AT1G50250tair10-symbols:FTSH1TIGRfam:TIGR01241TIGRFAMs:TIGR01241UniGene:At.21777UniProt:Q39102
Coordinates (TAIR10) chr1:-:18614398..18616930
Molecular Weight (calculated) 76763.70 Da
IEP (calculated) 5.54
GRAVY (calculated) -0.13
Length 716 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNSLLRSS SNFFLGSHII ISSPTPKTTR KPSFPFSFVS RAKYQITRSS QDENSPNGKP NSPFSSQVAL AAILLSSISS SPLALAVVDE PASPSVVIES
101: QAVKPSTPSP LFIQNEILKA PSPKSSDLPE GSQWRYSEFL NAVKKGKVER VRFSKDGSVV QLTAVDNRRA SVIVPNDPDL IDILAMNGVD ISVSEGESSG
201: NDLFTVIGNL IFPLLAFGGL FLLFRRAQGG PGGGPGGLGG PMDFGRSKSK FQEVPETGVS FADVAGADQA KLELQEVVDF LKNPDKYTAL GAKIPKGCLL
301: VGPPGTGKTL LARAVAGEAG VPFFSCAASE FVELFVGVGA SRVRDLFEKA KSKAPCIVFI DEIDAVGRQR GAGMGGGNDE REQTINQLLT EMDGFSGNSG
401: VIVLAATNRP DVLDSALLRP GRFDRQVTVD RPDVAGRVKI LQVHSRGKAL GKDVDFDKVA RRTPGFTGAD LQNLMNEAAI LAARRELKEI SKDEISDALE
501: RIIAGPEKKN AVVSEEKKRL VAYHEAGHAL VGALMPEYDP VAKISIIPRG QAGGLTFFAP SEERLESGLY SRSYLENQMA VALGGRVAEE VIFGDENVTT
601: GASNDFMQVS RVARQMIERF GFSKKIGQVA VGGPGGNPFM GQQMSSQKDY SMATADIVDA EVRELVEKAY KRATEIITTH IDILHKLAQL LIEKETVDGE
701: EFMSLFIDGQ AELYIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)