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AT1G50200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Alanyl-tRNA synthetase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Alanyl-tRNA synthetase (ALATS); FUNCTIONS IN: alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, nucleic acid binding, ATP binding; INVOLVED IN: alanyl-tRNA aminoacylation, response to cadmium ion; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Alanyl-tRNA synthetase, class IIc (InterPro:IPR002318), Alanyl-tRNA synthetase, class IIc, anti-codon-binding domain (InterPro:IPR018162), Alanyl-tRNA synthetase, class IIc, core domain (InterPro:IPR018165), Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), Alanyl-tRNA synthetase, class IIc, N-terminal (InterPro:IPR018164), Phosphoesterase, DHHA1 (InterPro:IPR003156); BEST Arabidopsis thaliana protein match is: Alanyl-tRNA synthetase, class IIc (TAIR:AT5G22800.1); Has 14725 Blast hits to 14601 proteins in 3159 species: Archae - 403; Bacteria - 7275; Metazoa - 708; Fungi - 195; Plants - 148; Viruses - 0; Other Eukaryotes - 5996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G50200-MONOMERBioCyc:ARA:GQT-1688-MONOMERBioGrid:26667EC:6.1.1.7eggNOG:COG0013eggNOG:KOG0188EMBL:AC007980
EMBL:BT002526EMBL:BT008807EMBL:CP002684EMBL:Y12555EMBL:Z22673EnsemblPlants:AT1G50200EnsemblPlants:AT1G50200.1
entrez:841442ExpressionAtlas:P36428GeneID:841442Genevisible:P36428GO:GO:0000049GO:GO:0004813GO:GO:0005524
GO:GO:0005739GO:GO:0005829GO:GO:0006400GO:GO:0006419GO:GO:0009507GO:GO:0016597GO:GO:0046686
GO:GO:0046872gramene_pathway:6.1.1.7gramene_pathway:TRNA-CHARGING-PWYHAMAP:MF_00036_Bhmmpanther:PTHR11777hmmpanther:PTHR11777:SF18HOGENOM:HOG000156964
InParanoid:P36428InterPro:IPR002318InterPro:IPR003156InterPro:IPR009000InterPro:IPR012947InterPro:IPR018162InterPro:IPR018163
InterPro:IPR018164InterPro:IPR018165InterPro:IPR023033iPTMnet:P36428KEGG:00970+6.1.1.7ncoils:CoilOMA:FQDHESE
PaxDb:P36428Pfam:P36428Pfam:PF01411Pfam:PF02272Pfam:PF07973Pfscan:PS50860PhylomeDB:P36428
PIR:D96538PRIDE:P36428PRINTS:PR00980PRO:PR:P36428PROSITE:PS50860ProteinModelPortal:P36428Proteomes:UP000006548
RefSeq:NP_175439.2SMART:SM00863SMR:P36428STRING:3702.AT1G50200.1SUPFAM:0049182SUPFAM:SSF101353SUPFAM:SSF50447
SUPFAM:SSF55186SUPFAM:SSF55681TAIR:AT1G50200tair10-symbols:ACDtair10-symbols:ALATSTIGRfam:TIGR00344TIGRFAMs:TIGR00344
UniGene:At.1836UniProt:P36428
Coordinates (TAIR10) chr1:-:18591429..18598311
Molecular Weight (calculated) 110495.00 Da
IEP (calculated) 6.40
GRAVY (calculated) -0.32
Length 1003 amino acids
Sequence (TAIR10)
(BLAST)
0001: MRLVKAASLL ISSTKPPSRV FYSSHLRRPF FSHFRFSSSS STSSSVAVMP GSEPSETQWP AKRVRDTYVD FFRGKGHKFW PSSPVVPHND PTLLFANAGM
0101: NQYKPIFLGT ADPNTELSKL SRACNTQKCI RAGGKHNDLD DVGKDTYHHT FFEMLGNWSF GDYFKKEAIE WAWELLTKVY GLPTDRIYAT YFGGDEKAGL
0201: QPDNEARDIW LKVLPSGRVL PFGCKDNFWE MGDTGPCGPC TEIHYDRIGN RDAASLVNND DPTCLEIWNL VFIQFNRESD GSLKPLPAKH VDTGMGFERL
0301: TSVLQNKMSN YDTDVFMPIF DDIQKATGAR PYSGKVGPED VDRVDMAYRV VADHIRTLSF AIADGSRPGN EGREYVLRRI LRRAVRYGKE ILKAEEGFFN
0401: GLVSSVIRVM GDVFTELKEH EKKITDIIKE EEASFCKTLA KGIEKFRKAG QAVQGNTLSG DDAFILWDTY GFPLDLTQLM AEERGLLVDV DGFNKAMEEA
0501: RERSRSAQNK QAGGAIVMDA DATSTLHKAG VSATDDSFKY IWFQDHESEL KAIYTGSTFL ESSAASDNVG LVLGSTSFYA EQGGQIFDTG LIEGSFGTFN
0601: VCNVQIFGGF VLHIGYLSKE TGEVSVGDKV ICKVDYERRK LIAPNHTCTH MLNYALKEVL GDHIDQKGSI VLPEKLRFDF SHGKPVDPED LRRIESIVNK
0701: QIKDELDVFS KEAVLSEAKR IKGLRAVFGE VYPDPVRVVS IGRKVEDLLA DPENNEWSLL SSEFCGGTHI TNTREAKAFA LLSEEGIAKG IRRVTAVTTE
0801: CAFDALNAAS LLEREVEDAS RAEGSALEKK VSALKSRVDA AIIPAAKKAD IRTKIASLQN EVRKAQKKIA EQNLKKSVKL ATEAAESAAS DGKTFCIIQL
0901: DVGLDAAAVR EAVSKVMEKK GMSIMVFSTD ESTNKAVVCA GVPEKSDQFK PLDVTEWLTT ALGPLKGRCG KGKGGLASGQ GTDASQVQAA LDMASSFASM
1001: KLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)