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AT1G49975.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3ZNeggNOG:ENOG410XY0CEMBL:AY084774EMBL:BT024576EMBL:CP002684EnsemblPlants:AT1G49975EnsemblPlants:AT1G49975.1
entrez:841421GeneID:841421GO:GO:0009522GO:GO:0015979Gramene:AT1G49975.1hmmpanther:PTHR36327hmmpanther:PTHR36327:SF1
InterPro:IPR008796KEGG:ath:AT1G49975OMA:GQSILMAPfam:PF05479PhylomeDB:Q8LFL5Proteomes:UP000006548RefSeq:NP_564561.1
STRING:3702.AT1G49975.1TAIR:AT1G49975UniGene:At.38122UniProt:Q8LFL5
Coordinates (TAIR10) chr1:+:18504845..18505431
Molecular Weight (calculated) 14730.50 Da
IEP (calculated) 10.22
GRAVY (calculated) -0.70
Length 129 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSISQSILM ALTVTVNKYA SSNVQAVRRN DTKRHSLTAP PADLGRRNIL FSSTSFIAAA LTSSDQLLQK YLKKTEENKA KNDKERLDSF YKRNYKDYFE
101: FVEGSIKGKT EAELSESEKR ILEWLKANK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)