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AT1G49890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.851
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Family of unknown function (DUF566)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Family of unknown function (DUF566) ; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF566) (TAIR:AT3G19570.2); Has 9198 Blast hits to 4153 proteins in 422 species: Archae - 34; Bacteria - 1349; Metazoa - 2630; Fungi - 1436; Plants - 341; Viruses - 197; Other Eukaryotes - 3211 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH8JeggNOG:ENOG4111T26EMBL:AC074110EMBL:AC079674EMBL:AY046022EMBL:BT000999EMBL:CP002684
EnsemblPlants:AT1G49890EnsemblPlants:AT1G49890.1entrez:841412GeneID:841412Genevisible:Q94AI1Gramene:AT1G49890.1hmmpanther:PTHR31807
hmmpanther:PTHR31807:SF4HOGENOM:HOG000239836InParanoid:Q94AI1InterPro:IPR007573iPTMnet:Q94AI1KEGG:ath:AT1G49890OMA:KTVVDIQ
PaxDb:Q94AI1Pfam:PF04484Pfam:Q94AI1PhylomeDB:Q94AI1PRIDE:Q94AI1PRO:PR:Q94AI1ProteinModelPortal:Q94AI1
Proteomes:UP000006548RefSeq:NP_564558.1STRING:3702.AT1G49890.1TAIR:AT1G49890tair10-symbols:QWRF2UniGene:At.17869UniProt:Q94AI1
Coordinates (TAIR10) chr1:+:18470282..18473463
Molecular Weight (calculated) 71537.70 Da
IEP (calculated) 11.39
GRAVY (calculated) -0.51
Length 659 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAAAISTTD PRNPPRDRPQ SLTNNGGQRR PRGKQVPSRY LSPSPSHSVS STTTTTTTTT TTTSSSSSSS SSAILRTSKR YPSPSPLLSR STTNSASNSI
101: KTPSLLPKRS QSVDRRRPSA VSVTVGTEMS AATKMLITST RSLSVSFQGE AFSLPISKKK ETTSTPVSHR KSTPERRRST PVRDQRENSK PVDQQRWPGA
201: SRRGNSESVV PNSLSRSLDC GSDRGKLGSG FVGRSMLHNS MIDESPRVSV NGRLSLDLGG RDEYLDIGDD IQRRPNNGLT SSVSCDFTAS DTDSVSSGST
301: NGVQECGSGV NGEISKSKSL PRNIMASARF WQETNSRLRR LQDPGSPLSS SPGLKTSSIS SKFGLSKRFS SDAVPLSSPR GMASPVRGSA IRSASPSKLW
401: ATTTSSPARA LSSPSRARNG VSDQMNAYNR NNTPSILSFS ADIRRGKIGE DRVMDAHLLR LLYNRDLQWR FVNARADSTV MVQRLNAEKN LWNAWVSISE
501: LRHSVTLKRI KLLLLRQKLK LASILRGQMG FLEEWSLLDR DHSSSLSGAT ESLKASTLRL PIVGKTVVDI QDLKHAVSSA VDVMQAMSSS IFSLTSKVDE
601: MNSVMVETVN VTAKEKVLLE RCQGCLSRVA AMQVTDCSMK THIIQLSRIP ITSSLTPQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)