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AT1G49850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G15580.1); Has 9155 Blast hits to 9129 proteins in 266 species: Archae - 0; Bacteria - 4; Metazoa - 2526; Fungi - 625; Plants - 4723; Viruses - 8; Other Eukaryotes - 1269 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AK227950EMBL:BT004600EMBL:CP002684EnsemblPlants:AT1G49850EnsemblPlants:AT1G49850.1
entrez:841408Gene3D:3.30.40.10GeneID:841408GO:GO:0008270Gramene:AT1G49850.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF182
HOGENOM:HOG000239838IntAct:Q852U6InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT1G49850OMA:CLPCGHRPfam:PF13639
Pfscan:PS50089PhylomeDB:Q852U6PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_564556.1SMART:SM00184SMR:Q852U6
STRING:3702.AT1G49850.1SUPFAM:SSF57850TAIR:AT1G49850UniGene:At.25265UniProt:Q852U6
Coordinates (TAIR10) chr1:-:18455326..18456444
Molecular Weight (calculated) 28448.10 Da
IEP (calculated) 8.38
GRAVY (calculated) -0.85
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSASELFST RRSRPGRSDP ALESDTSSYR HHSHHHHRRH GVHHHNQRHD SDGCDPLRRP TPRLRRFFHH PIQERSRPIR DVQGTSQYLN TDSTDTETQS
101: SSFVNLNGSE RLPGAVLLAR DRLFERLRGV SLSSNSRSNR VSLDDQRESS FHSIDGDPIF QLAGLQVTYE CNKKPQGLTQ DAINCLHRQT FSSAEVKSEM
201: RDCSICLESF TKGDMLISLP CTHSFHSSCL NPWLRACGDC PCCRRAIAKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)