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AT1G49820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-methyl-5-thioribose kinase
Curator
Summary (TAIR10)
encodes 5-methylthioribose kinase, involved in methionine cycle
Computational
Description (TAIR10)
S-methyl-5-thioribose kinase (MTK); CONTAINS InterPro DOMAIN/s: Methylthioribose kinase (InterPro:IPR009212), Aminoglycoside phosphotransferase (InterPro:IPR002575), Protein kinase-like domain (InterPro:IPR011009); Has 954 Blast hits to 954 proteins in 299 species: Archae - 0; Bacteria - 750; Metazoa - 4; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G49820-MONOMERBioGrid:26630BRENDA:2.7.1.100EC:2.7.1.100eggNOG:COG4857eggNOG:ENOG410II9YEMBL:AC079674
EMBL:AY057512EMBL:AY090315EMBL:CP002684EnsemblPlants:AT1G49820EnsemblPlants:AT1G49820.1entrez:841405EvolutionaryTrace:Q9C6D2
GeneID:841405Genevisible:Q9C6D2GO:GO:0005524GO:GO:0005829GO:GO:0019509GO:GO:0042802GO:GO:0046522
GO:GO:0071281GO:GO:0071369GO:GO:0071732Gramene:AT1G49820.1gramene_pathway:2.7.1.100gramene_pathway:PWY-4361-ARAgramene_plant_reactome:1119624
gramene_plant_reactome:6873815HAMAP:MF_01683hmmpanther:PTHR34273hmmpanther:PTHR34273:SF1HOGENOM:HOG000082744InParanoid:Q9C6D2InterPro:IPR002575
InterPro:IPR009212InterPro:IPR011009KEGG:00270+2.7.1.100KEGG:ath:AT1G49820KO:K00899OMA:AHNADFEPaxDb:Q9C6D2
PDB:2PYWPDBsum:2PYWPfam:PF01636Pfam:Q9C6D2PhylomeDB:Q9C6D2PIR:A96535PIRSF:PIRSF031134
PRIDE:Q9C6D2PRO:PR:Q9C6D2ProteinModelPortal:Q9C6D2Proteomes:UP000006548RefSeq:NP_564555.1SMR:Q9C6D2STRING:3702.AT1G49820.1
SUPFAM:SSF56112TAIR:AT1G49820tair10-symbols:ATMTKtair10-symbols:MTKTIGRfam:TIGR01767TIGRFAMs:TIGR01767UniGene:At.20360
UniPathway:UPA00904UniProt:Q9C6D2
Coordinates (TAIR10) chr1:+:18443005..18444907
Molecular Weight (calculated) 48073.40 Da
IEP (calculated) 5.48
GRAVY (calculated) -0.27
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFEEFTPLN EKSLVDYIKS TPALSSKIGA DKSDDDLVIK EVGDGNLNFV FIVVGSSGSL VIKQALPYIR CIGESWPMTK ERAYFEATTL RKHGNLSPDH
101: VPEVYHFDRT MALIGMRYLE PPHIILRKGL IAGIEYPFLA DHMSDYMAKT LFFTSLLYHD TTEHRRAVTE FCGNVELCRL TEQVVFSDPY RVSTFNRWTS
201: PYLDDDAKAV REDSALKLEI AELKSMFCER AQALIHGDLH TGSVMVTQDS TQVIDPEFSF YGPMGFDIGA YLGNLILAFF AQDGHATQEN DRKEYKQWIL
301: RTIEQTWNLF NKRFIALWDQ NKDGPGEAYL ADIYNNTEVL KFVQENYMRN LLHDSLGFGA AKMIRRIVGV AHVEDFESIE EDKRRAICER SALEFAKMLL
401: KERRKFKSIG EVVSAIQQQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)