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AT1G49760.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : poly(A) binding protein 8
Curator
Summary (TAIR10)
polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family.
Computational
Description (TAIR10)
poly(A) binding protein 8 (PAB8); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 2 (TAIR:AT4G34110.1); Has 986469 Blast hits to 485112 proteins in 21501 species: Archae - 20784; Bacteria - 581960; Metazoa - 196391; Fungi - 29721; Plants - 62748; Viruses - 68352; Other Eukaryotes - 26513 (source: NCBI BLink).
Protein Annotations
BioGrid:26624eggNOG:ENOG410XR5XeggNOG:KOG0123EMBL:AC011807
EMBL:AF370517EMBL:AY064622EMBL:CP002684EnsemblPlants:AT1G49760
EnsemblPlants:AT1G49760.1EnsemblPlants:AT1G49760.2entrez:841399Gene3D:1.10.1900.10
Gene3D:3.30.70.330GeneID:841399Genevisible:Q9FXA2GO:GO:0000166
GO:GO:0003723GO:GO:0005634GO:GO:0005829GO:GO:0006417
GO:GO:0016032GO:GO:0046686Gramene:AT1G49760.1Gramene:AT1G49760.2
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF349HOGENOM:HOG000217922InParanoid:Q9FXA2
IntAct:Q9FXA2InterPro:IPR000504InterPro:IPR002004InterPro:IPR003954
InterPro:IPR006515InterPro:IPR012677iPTMnet:Q9FXA2KEGG:ath:AT1G49760
KO:K13126OMA:NELNFMAPaxDb:Q9FXA2Pfam:PF00076
Pfam:PF00658Pfam:Q9FXA2Pfscan:PS50102Pfscan:PS51309
PhylomeDB:Q9FXA2PIR:C96534PRIDE:Q9FXA2PRO:PR:Q9FXA2
ProMEX:Q9FXA2PROSITE:PS50102PROSITE:PS51309ProteinModelPortal:Q9FXA2
Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_001185184.1RefSeq:NP_564554.1SMART:SM00360SMART:SM00361
SMART:SM00517SMR:Q9FXA2STRING:3702.AT1G49760.1SUPFAM:SSF54928
SUPFAM:SSF63570TAIR:AT1G49760tair10-symbols:PAB8tair10-symbols:PABP8
TIGRfam:TIGR01628TIGRFAMs:TIGR01628UniGene:At.21584UniGene:At.67107
UniGene:At.67318UniProt:Q9FXA2
Coordinates (TAIR10) chr1:+:18416740..18419753
Molecular Weight (calculated) 72783.60 Da
IEP (calculated) 7.62
GRAVY (calculated) -0.48
Length 671 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)