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AT1G49720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : abscisic acid responsive element-binding factor 1
Curator
Summary (TAIR10)
Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses.
Computational
Description (TAIR10)
abscisic acid responsive element-binding factor 1 (ABF1); FUNCTIONS IN: protein binding, DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: abscisic acid mediated signaling pathway, regulation of transcription, DNA-dependent, response to stress; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: ABRE binding factor 4 (TAIR:AT3G19290.1); Has 1956 Blast hits to 1888 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 452; Fungi - 28; Plants - 1407; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Protein Annotations
BioGrid:26620eggNOG:ENOG410IZK4eggNOG:ENOG410ZM39EMBL:AC011807EMBL:AF093544EMBL:AK226983EMBL:BT008575
EMBL:BT008647EMBL:CP002684EnsemblPlants:AT1G49720EnsemblPlants:AT1G49720.1entrez:841395ExpressionAtlas:Q9M7Q5GeneID:841395
Genevisible:Q9M7Q5GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009738GO:GO:0043565hmmpanther:PTHR22952
hmmpanther:PTHR22952:SF103HOGENOM:HOG000237278InParanoid:Q9M7Q5IntAct:Q9M7Q5InterPro:IPR004827iPTMnet:Q9M7Q5ncoils:Coil
PaxDb:Q9M7Q5Pfam:PF00170Pfam:Q9M7Q5Pfscan:PS50217PhylomeDB:Q9M7Q5PIR:G96533PRIDE:Q9M7Q5
PRO:PR:Q9M7Q5PROSITE:PS00036PROSITE:PS50217ProteinModelPortal:Q9M7Q5Proteomes:UP000006548RefSeq:NP_564551.1scanprosite:PS00036
SMART:SM00338SMR:Q9M7Q5STRING:3702.AT1G49720.2SUPFAM:SSF57959TAIR:AT1G49720tair10-symbols:ABF1UniGene:At.46187
UniGene:At.48293UniProt:Q9M7Q5
Coordinates (TAIR10) chr1:+:18400826..18402354
Molecular Weight (calculated) 42730.10 Da
IEP (calculated) 9.55
GRAVY (calculated) -0.74
Length 392 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTHIDINNL GGDTSRGNES KPLARQSSLY SLTFDELQST LGEPGKDFGS MNMDELLKNI WTAEDTQAFM TTTSSVAAPG PSGFVPGGNG LQRQGSLTLP
101: RTLSQKTVDE VWKYLNSKEG SNGNTGTDAL ERQQTLGEMT LEDFLLRAGV VKEDNTQQNE NSSSGFYANN GAAGLEFGFG QPNQNSISFN GNNSSMIMNQ
201: APGLGLKVGG TMQQQQQPHQ QQLQQPHQRL PPTIFPKQAN VTFAAPVNMV NRGLFETSAD GPANSNMGGA GGTVTATSPG TSSAENNTWS SPVPYVFGRG
301: RRSNTGLEKV VERRQKRMIK NRESAARSRA RKQAYTLELE AEIESLKLVN QDLQKKQAEI MKTHNSELKE FSKQPPLLAK RQCLRRTLTG PW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)