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AT1G49670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24130194 (2013): peroxisome
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:19329564 (2009): peroxisome
  • PMID:18931141 (2008): peroxisome
  • PMID:17951448 (2007): peroxisome
  • PMID:14671022 (2004): mitochondrion
FP Images

onion epidermal cell layer (peroxisomal marker)

At1g-GFP-49670
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARP protein (REF)
Curator
Summary (TAIR10)
molecular function has not been defined. Was shown involved in oxidative stress tolerance.
Computational
Description (TAIR10)
NQR; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress, metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198), GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Zinc-binding dehydrogenase family protein (TAIR:AT5G37980.1); Has 139834 Blast hits to 139487 proteins in 3900 species: Archae - 1368; Bacteria - 93458; Metazoa - 6844; Fungi - 8617; Plants - 3827; Viruses - 2; Other Eukaryotes - 25718 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G49670-MONOMERBioCyc:ARA:GQT-593-MONOMEReggNOG:COG1028eggNOG:COG2130eggNOG:KOG1196eggNOG:KOG4169EMBL:AC011807
EMBL:AY062728EMBL:AY072306EMBL:AY093342EMBL:BT008393EMBL:CP002684EnsemblPlants:AT1G49670EnsemblPlants:AT1G49670.1
entrez:841391ExpressionAtlas:Q9FX95Gene3D:3.40.50.720Gene3D:3.90.180.10GeneID:841391GO:GO:0008270GO:GO:0016491
Gramene:AT1G49670.1gramene_plant_reactome:1119309gramene_plant_reactome:6873988hmmpanther:PTHR11695hmmpanther:PTHR11695:SF264InterPro:IPR002085InterPro:IPR002347
InterPro:IPR002364InterPro:IPR011032InterPro:IPR013149InterPro:IPR013154InterPro:IPR016040InterPro:IPR020843InterPro:IPR020904
PANTHER:PTHR11695Pfam:PF00106Pfam:PF00107Pfam:PF08240Pfam:PF16884PhylomeDB:Q9FX95PIR:D96533
PRINTS:PR00080PRINTS:PR00081PROSITE:PS00061PROSITE:PS01162Proteomes:UP000006548RefSeq:NP_175390.2scanprosite:PS00061
scanprosite:PS01162SMART:SM00829SMR:Q9FX95STRING:3702.AT1G49670.2SUPFAM:SSF50129SUPFAM:SSF51735TAIR:AT1G49670
tair10-symbols:NQRUniGene:At.91UniProt:Q9FX95
Coordinates (TAIR10) chr1:-:18381591..18386021
Molecular Weight (calculated) 67948.10 Da
IEP (calculated) 9.47
GRAVY (calculated) 0.09
Length 629 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIKPGLSAL VTGGASGIGR ALCLALAEKG VFVTVADFSE EKGQETTSLV REANAKFHQG LSFPSAIFVK CDVTNRGDLL AAFDKHLATF GTLDICINNA
101: GISTPLRFDK DDTDGSKSWK HTINVDLIAV VEGTQLAIKA MKAKQKPGVI INMGSAAGLY PMPVDPIYAA SKAGVVLFTR SLAYYRRQGI RINVLCPEFI
201: KTDLAEAIDA SILESIGGYM SMDMLIKGAF ELITDEKKAG ACLWITKRRG LEYWPTPMEE TKYLVGSSSR KRPSFKVSTK IEFPQSFEKM IVHTLSHKFR
301: SATRIVRAPL QLPIGPHQVL LKIIYAGVNA SDVNFSSGRY FTGGSPKLPF DAGFEGVGLI AAVGESVKNL EVGTPAAVMT FGAYSEYMIV SSKHVLPVPR
401: PDPEVVAMLT SGLTALIALE KAGQMKSGET VLVTAAAGGT GQFAVQLAKL SGNKVIATCG GSEKAKLLKE LGVDRVIDYK SENIKTVLKK EFPKGVNIIY
501: ESVGGQMFDM CLNALAVYGR LIVIGMISQY QGEKGWEPAK YPGLCEKILA KSQTVAGFFL VQYSQLWKQN LDKLFNLYAL GKLKVGIDQK KFIGLNAVAD
601: AVEYLHSGKS TGKVVVCIDP AFEQKTSRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)