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AT1G49500.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.934
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19030.1); Has 24 Blast hits to 24 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JV8PeggNOG:ENOG411064VEMBL:AC007504EMBL:AF370563
EMBL:AY064156EMBL:AY087230EMBL:AY097409EMBL:AY099654
EMBL:AY128841EMBL:BT002064EMBL:CP002684EnsemblPlants:AT1G49500
EnsemblPlants:AT1G49500.1entrez:841374GeneID:841374Gramene:AT1G49500.1
hmmpanther:PTHR37705hmmpanther:PTHR37705:SF1HOGENOM:HOG000153028KEGG:ath:AT1G49500
OMA:TMKLEICPhylomeDB:Q9XIB7PIR:G96531Proteomes:UP000006548
RefSeq:NP_564548.1STRING:3702.AT1G49500.1TAIR:AT1G49500UniGene:At.23092
UniGene:At.72722UniProt:Q9XIB7
Coordinates (TAIR10) chr1:-:18321988..18322179
Molecular Weight (calculated) 7081.90 Da
IEP (calculated) 8.49
GRAVY (calculated) 0.59
Length 63 amino acids
Sequence (TAIR10)
(BLAST)
1: MVTLKMEICI ELLKLTVDFV AAVAESIEVA FRHRPPPVIQ YSSVMYGRRS NYTAVPIPLV GFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)