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AT1G49480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : related to vernalization1 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
related to vernalization1 1 (RTV1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G18990.1); Has 354 Blast hits to 329 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 352; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:26597eggNOG:ENOG410JV1AeggNOG:ENOG41106BTEMBL:AC007504EMBL:AY042868EMBL:BT015682EMBL:CP002684
EnsemblPlants:AT1G49480EnsemblPlants:AT1G49480.1entrez:841372Gene3D:2.40.330.10GeneID:841372Genevisible:Q9XIB5GO:GO:0003677
GO:GO:0005634GO:GO:0005886GO:GO:0006351GO:GO:0006355GO:GO:0009409GO:GO:0034613Gramene:AT1G49480.1
hmmpanther:PTHR31920hmmpanther:PTHR31920:SF18HOGENOM:HOG000005864InParanoid:Q9XIB5IntAct:Q9XIB5InterPro:IPR003340InterPro:IPR015300
KEGG:ath:AT1G49480OMA:FKESKAEPaxDb:Q9XIB5Pfam:PF02362Pfam:Q9XIB5Pfscan:PS50863PhylomeDB:Q9XIB5
PIR:E96531PRIDE:Q9XIB5PRO:PR:Q9XIB5PROSITE:PS50863ProteinModelPortal:Q9XIB5Proteomes:UP000006548RefSeq:NP_564547.1
SMART:SM01019SMR:Q9XIB5STRING:3702.AT1G49480.1SUPFAM:SSF101936TAIR:AT1G49480tair10-symbols:RTV1UniGene:At.24480
UniGene:At.70635UniProt:Q9XIB5
Coordinates (TAIR10) chr1:-:18314596..18315460
Molecular Weight (calculated) 25851.50 Da
IEP (calculated) 9.53
GRAVY (calculated) -0.76
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MQMDSAQNQF NKRARLFEDP ELKDAKVIYP SNPESTEPVN KGYGGSTAIQ SFFKESKAEE TPKVLKKRGR KKKNPNPEEV NSSTPGGDDS ENRSKFYESA
101: SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG
201: DVCVFELLRT RDFVLEVTAF RVNEYV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)