suba logo
AT1G49470.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.750
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Family of unknown function (DUF716)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Family of unknown function (DUF716) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF716) (TAIR:AT1G55230.1); Has 395 Blast hits to 395 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 157; Fungi - 0; Plants - 236; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK9NeggNOG:ENOG410ZJZ7EMBL:AC007504EMBL:BT025653EMBL:CP002684EnsemblPlants:AT1G49470EnsemblPlants:AT1G49470.1
entrez:841370GeneID:841370GO:GO:0016021Gramene:AT1G49470.1hmmpanther:PTHR16007hmmpanther:PTHR16007:SF14InterPro:IPR006904
KEGG:ath:AT1G49470OMA:AMANLQFPANTHER:PTHR16007Pfam:PF04819PhylomeDB:Q9XIB3PIR:C96531Proteomes:UP000006548
RefSeq:NP_564546.1TAIR:AT1G49470TMHMM:TMhelixUniGene:At.38225UniProt:Q9XIB3
Coordinates (TAIR10) chr1:+:18310554..18311462
Molecular Weight (calculated) 33621.10 Da
IEP (calculated) 7.50
GRAVY (calculated) 0.53
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTFLGHFVP GLSLALLGLW HLFNTIRSYC LKGPEAFSAK FWFPFPKLKH LELILILFFS FLSITLLTLD FPNFNFSSLK PDNLEHASMF LHLIIFACFA
101: LFCELTLCSD LFSGLIGVLS ASVFAQELFL LHFHSTDHSG LEGHYHFLLQ LIAFVSFSSA LASASFPKSF SAALFLPISV MFQGCWFLNM GFMLWIPEYV
201: PRGCVSNMST STDNNRRSVY HSGAVACESP GAEIRAKALA NLQFSWMLSA ILIITCALCL KYSGKVVLPK IRSSLEYERL CRQGSDRSAT VTVEAPASSD
301: QQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)