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AT1G49430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.986
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : long-chain acyl-CoA synthetase 2
Curator
Summary (TAIR10)
Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation.
Computational
Description (TAIR10)
long-chain acyl-CoA synthetase 2 (LACS2); CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G64400.1); Has 53337 Blast hits to 50359 proteins in 3209 species: Archae - 917; Bacteria - 34261; Metazoa - 2388; Fungi - 2032; Plants - 1855; Viruses - 1; Other Eukaryotes - 11883 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G49430-MONOMERBioCyc:MetaCyc:AT1G49430-MONOMEREC:6.2.1.3eggNOG:COG1022eggNOG:KOG1256EMBL:AC007504EMBL:AF503752
EMBL:AY065424EMBL:AY094420EMBL:BT001970EMBL:CP002684EnsemblPlants:AT1G49430EnsemblPlants:AT1G49430.1entrez:841367
GeneID:841367Genevisible:Q9XIA9GO:GO:0001676GO:GO:0004467GO:GO:0005524GO:GO:0005783GO:GO:0006631
GO:GO:0009506GO:GO:0010143GO:GO:0010311GO:GO:0031957GO:GO:0050832Gramene:AT1G49430.1gramene_pathway:2.7.8.11
gramene_pathway:6.2.1.3gramene_pathway:PHOSLIPSYN2-PWYgramene_pathway:PWY-5143gramene_pathway:PWY-5995hmmpanther:PTHR24096hmmpanther:PTHR24096:SF134HOGENOM:HOG000159459
InParanoid:Q9XIA9InterPro:IPR000873InterPro:IPR020845iPTMnet:Q9XIA9KEGG:ath:AT1G49430KO:K01897OMA:EDILSPW
PaxDb:Q9XIA9Pfam:PF00501Pfam:Q9XIA9PhylomeDB:Q9XIA9PIR:G96530PRIDE:Q9XIA9PRO:PR:Q9XIA9
PROSITE:PS00455ProteinModelPortal:Q9XIA9Proteomes:UP000006548RefSeq:NP_175368.2SABIO-RK:Q9XIA9scanprosite:PS00455SMR:Q9XIA9
STRING:3702.AT1G49430.1SUPFAM:SSF56801TAIR:AT1G49430tair10-symbols:LACS2tair10-symbols:LRD2TCDB:4.C.1.1.14UniGene:At.27757
UniPathway:UPA00199UniProt:Q9XIA9
Coordinates (TAIR10) chr1:+:18291188..18295641
Molecular Weight (calculated) 74393.20 Da
IEP (calculated) 6.02
GRAVY (calculated) -0.20
Length 665 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLAADNVLL VEEGRPATAE HPSAGPVYRC KYAKDGLLDL PTDIDSPWQF FSEAVKKYPN EQMLGQRVTT DSKVGPYTWI TYKEAHDAAI RIGSAIRSRG
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)