AT1G49380.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : cytochrome c biogenesis protein family | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome c biogenesis protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ResB-like (InterPro:IPR007816); Has 1416 Blast hits to 1414 proteins in 516 species: Archae - 0; Bacteria - 1016; Metazoa - 2; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:18276794..18279204 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59396.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.76 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||||||
| Length | 547 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIVTLNPKIL HFSKIHPFSR PSSYLCRTRN VSLITNCKLQ KPQDGNQRSS SNRNLTKTIS LSDSAPPVTE ETGDGIVKGG GNGGGGGGDG RGGLGFLKIL 101: PRKVLSVLSN LPLAITEMFT IAALMALGTV IEQGETPDFY FQKYPEDNPV LGFFTWRWIS TLGLDHMYSA PIFLGMLVLL AASLMACTYT TQIPLVKVAR 201: RWSFMKSDEA IKKQEFADTL PRASIQDLGM ILMGDGFEVF MKGPSLYAFK GLAGRFAPIG VHIAMLLIMV GGTLSATGSF RGSVTVPQGL NFVMGDVLAP 301: IGFFSIPTDA FNTEVHVNRF TMDYYDSGEV SQFHSDLSLR DLNGKEVLRK TISVNDPLRY GGVTVYQTDW SFSALQVTKD GEGPFNLAMA PIKINGDKKL 401: YGTFLPVGDT NAPNVKGISM LARDLQSIVV YDLDGKFAGI RRPSSKLPIE INGMKIVIED AIGSTGLELK TDPGVPVVYA GFGALMLTTC ISYLSHSQIW 501: ALQNGTALVV GGKTNRAKNQ FPDDMNRLLD QVPELIKKNT SVVSEQS |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)